Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02692 ATGGAAGCTCTCATGGCTATGCGTGATTTTAAGTCAATTGTTTTTCCCGATCCAAAATCTTTCATAGAAGAAAGGAAGATGTTAGCGAACCTGTCAACAAAAGGAAGATATGCCTTTCGAAATCTTCGTAGAATACCTCTCAAAGGGGGGCTACTGTTAAGTATTTTGGCCACTACTTCAAGTGTTCTCGATCACTATTTACAGCGTACAAATGCTGGATTTGCTATTGGTTTTACATCAATTCTAATTATTCCTCAGTGGATGGCTCCAGAAGCTCTTCACAACGAGCCATCAAATGAGAAGTGTGATCTTTACAACTTTGGGGTAATCATGTGGGAGCTTACAACATTGCAATAA 357 0.3922 MEALMAMRDFKSIVFPDPKSFIEERKMLANLSTKGRYAFRNLRRIPLKGGLLLSILATTSSVLDHYLQRTNAGFAIGFTSILIIPQWMAPEALHNEPSNEKCDLYNFGVIMWELTTLQ 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02692 118 Gene3D Transferase(Phosphotransferase) domain 1 27 118 - -
Vifa3g02692 118 SUPERFAMILY Protein kinase-like (PK-like) 77 116 IPR011009 -
Vifa3g02692 118 Pfam Protein tyrosine and serine/threonine kinase 85 117 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02692 Vifa-Chr3 743170390 743171044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02692 47 118 MAP Kinase Kinase Kinase AT5G03730 50.000 3.95e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vifa3g02692 PK_Tyr_Ser-Thr 1e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02692 K14510 - ncol:116263855 71.6329