Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02691 ATGTCCTCATGCGTCACTATTCTTCGAACATCTCTCATCTTCCAACTTCGAACATCTCTCATCTTCCAACCGGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCTGTCTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAGAAGTCTTAATGTAGGTTTTGTTCTCGCAATGACAGCAACTGCTACAACCACAACCTTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGTTCTGATAAAGTCTCCTCCTTTTGCGGATGTTAAAGGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGGAATATGTTGGAGCCACCGAACTCAGCACTGCTACGTCGCTTCTTCAACAGCTTTTTGTCGAATTTCAGCTTAAATGGCTGGCAGAGGATATGGACGAGGACGAGGACGCGGCGGATTTCAAAATTATGCACGACCAGAGCCATTTGTACTTTTTCCCGAGGAGAAGGGTCTCTATGGACAATGATAGTTGCCATGATTGTACATTGATCAAGATTGATAGTGTCAATAAACCAGGAATTCTGCTGGAAGTCGTACAAATCCTAACAGACCTTGACTTCATAATCACCAAAGCTTACATATCTTCTGATGGTGGATGGTTTATGGATGGGAGTTATGCCAGATGGTAA 1053 0.4122 MSSCVTILRTSLIFQLRTSLIFQPVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHRSLNVGFVLAMTATATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRMKDLLVLIKSPPFADVKGIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQEYVGATELSTATSLLQQLFVEFQLKWLAEDMDEDEDAADFKIMHDQSHLYFFPRRRVSMDNDSCHDCTLIKIDSVNKPGILLEVVQILTDLDFIITKAYISSDGGWFMDGSYARW 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02691 350 Gene3D - 120 241 IPR027417 -
Vifa3g02691 350 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 133 293 IPR001650 -
Vifa3g02691 350 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 49 58 IPR002464 -
Vifa3g02691 350 SMART helicmild6 163 239 IPR001650 -
Vifa3g02691 350 Gene3D - 6 110 IPR027417 -
Vifa3g02691 350 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 112 IPR014001 -
Vifa3g02691 350 SUPERFAMILY ACT-like 299 346 IPR045865 -
Vifa3g02691 350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 236 IPR027417 -
Vifa3g02691 350 Pfam Helicase conserved C-terminal domain 150 235 IPR001650 -
Vifa3g02691 350 PANTHER DNA HELICASE RECQ FAMILY MEMBER 23 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02691 Vifa-Chr3 742789930 742794953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02691 153 235 Eukaryotic Initiation Factors Gene Family AT3G19760 28.916 7.90e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02691 K10730 - gmx:100811214 338.961