Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02680 ATGCCAACAACAACAACACCATCAACGTTTGGTGGCTTAGAAAGTCCAAACTTAAACTCATCCAACACTCATGCACCTCCCAAACAAAGCCCCCGAGAATCGCGTGACCTTCCTCCTTTACTCTCTTCTTCTTATCCAATCACTCTTAAGTTTATGGACGTGGGATACAGATTAAAGATAGAGAATAAAAAAGGAGGGTGCATCAAGAACTTCTTTACCGCGCTCGAATCACAACCGTCTGATCAAAGATCAACGCAAGAGAGAGTCATTCTCAACGGTGTAACAGGAATAGCTTACCCAGGAGAGATCCTAGCCATTCTAGGCCCATCTGGAAGCGGAAAATCGACGCTGTTAAACTCACTCGCAGGGAGGCTTCATGGAAACGATCTCACTGGAACAATCCTCGCTAACTCATCAAAACTCAACCGAACCATTCTCCGTCGAACCGGGTTCGTTACACAGGACGATATTCTCTACCCTCACTTAACGGTTCGCGAGACACTGGTTTTCTGCTCCATGCTGCGTCTCCCGAGGACGCTTTCGCGGGAGACGAAGGTAGCAGCGGCGGAGTCAGTGATCGTGGAGTTAGGTTTAAGCAAATGTGAGAACACTATCATTGGCAATAGCTTCATTCGCGGTGTTTCTGGTGGAGAGAGGAAGCGCGTGAGTATCGCTCACGAGATGTTGGTGGACCCGGCGCTTTTGATCTTGGATGAACCTACCTCTGGATTGGACTCCACGGCGGCGCACCGCCTTGTGTCGACGCTGGCCTCCTTGGCGAGGAAAGGGAAGACAGTGGTTACGTCAGTGCACCAGCCGTCGAGTCGTGTCTACCAGATGTTTGATAAAGTGCTTGTGTTGTCCGAAGGTAACTGTATGTACTACGGCAAAGGAACAGACGCCATGAGGTATTTCGAGTCGGTTGGATTCGCTCCATCCTTCCCGGTTAATCCGGCGGATTTTCTGCTCGATCTCGCTAACGGTGTTTGTCATGTAGATGGTGTAAGTGAAAAAGATCGACCAAACATAAAGCAAAATCTAATTCAATCATACAACACAGAACTCGGTCCAAAGGTAAAATCTCTCTGCATGGACACAGCAAATGTTTCAACAAAAGGAACTAACCCTGTAAGAAGCAACTCTTCAAAAGAACGTAGATATAATGACAGAGTTAGCATCTTTGATTGGTTTTACCAATTCAGTATTCTACTCCAGAGAAGCCTCAAAGAAAGAAAATATGAATCATTCAACATACTGAGAGTTTCTCAAGTTGTTGCCGCTGCATTACTAGCTGGTTTAATGTGGTGGCATTCAGACTATATGAACATTCAAGATAGGCTTGGATTACTCTTCTTCGTTTCAATCTTTTGGGGTGTATTCCCGTCTTTCAACTCTGTGTTTGCATTCCCACAAGAGCGCGCAATCTTTGTAAAAGAGAGAGCTTCTGGTATGTACACATTGTCATCCTATTTCATGGCTAGAATTGTCGGCGACCTACCAATGGAGCTTATTCTTCCAACAATTTTCCTCATTATTACATACTGGATGGGAGGATTGAAGCCTGATTTGTTGTCTTTTCTCTTAACATTGTTGGTTGTTCTTTTATTCGTGCTTGTATCACAAGGTCTTGGACTTGCTTTAGGTGCAGCAATAATGGATGCTAAACAAGCTTCCACAGTTGCAGCAGTTACAATGCTAGCATTTGTTTTAACAGGTGGATACTATGTTCATAAGGTTCCATCTTGTGTTGTTTGGATCAAATATATATCCACAACATTCTATAGTTACAGACTTTTGACTAGAATTCAATATGGTGATGGCAAAAAAATTGCTTACCTATTGGGTTGCAATCATGAGAGTAGTACTAGTGATGGAGCTAACTGCAAATTTCTTGATGAAGATGTGGTGGGTCAAATGGGCCCAATGGGAAGCATTGGAGTGTTGTTTTTCATGTTTGTGTTTTACAGATTATTGGCTTACCTTGCCTTGAGACGTATAAAAAATTGA 2007 0.4375 MPTTTTPSTFGGLESPNLNSSNTHAPPKQSPRESRDLPPLLSSSYPITLKFMDVGYRLKIENKKGGCIKNFFTALESQPSDQRSTQERVILNGVTGIAYPGEILAILGPSGSGKSTLLNSLAGRLHGNDLTGTILANSSKLNRTILRRTGFVTQDDILYPHLTVRETLVFCSMLRLPRTLSRETKVAAAESVIVELGLSKCENTIIGNSFIRGVSGGERKRVSIAHEMLVDPALLILDEPTSGLDSTAAHRLVSTLASLARKGKTVVTSVHQPSSRVYQMFDKVLVLSEGNCMYYGKGTDAMRYFESVGFAPSFPVNPADFLLDLANGVCHVDGVSEKDRPNIKQNLIQSYNTELGPKVKSLCMDTANVSTKGTNPVRSNSSKERRYNDRVSIFDWFYQFSILLQRSLKERKYESFNILRVSQVVAAALLAGLMWWHSDYMNIQDRLGLLFFVSIFWGVFPSFNSVFAFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLIITYWMGGLKPDLLSFLLTLLVVLLFVLVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHKVPSCVVWIKYISTTFYSYRLLTRIQYGDGKKIAYLLGCNHESSTSDGANCKFLDEDVVGQMGPMGSIGVLFFMFVFYRLLAYLALRRIKN 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02680 668 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 314 IPR003439 GO:0005524
Vifa3g02680 668 SMART AAA_5 100 291 IPR003593 GO:0016887
Vifa3g02680 668 Pfam ABC transporter 92 242 IPR003439 GO:0005524
Vifa3g02680 668 Pfam ABC-2 type transporter 398 603 IPR013525 GO:0016020|GO:0140359
Vifa3g02680 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 307 IPR027417 -
Vifa3g02680 668 MobiDBLite consensus disorder prediction 1 39 - -
Vifa3g02680 668 FunFam ABC transporter G family member 22 78 308 - -
Vifa3g02680 668 MobiDBLite consensus disorder prediction 1 28 - -
Vifa3g02680 668 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 29 660 - -
Vifa3g02680 668 Gene3D - 82 308 IPR027417 -
Vifa3g02680 668 Pfam ABC-2 type transporter 271 370 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02680 Vifa-Chr3 738451021 738457548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02680 71 296 Calmodulin-binding Proteins AT2G36910 27.843 2.77e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02680 K05681 - gmx:100812367 1035.4