Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02671 ATGACATCAACTCAAATTTCTGAAAGATCATCATCATCAATGGATATGGAATCAAGTGTACCTCCAGGATTTAGATTTCATCCGACAGAAGAGGAACTTGTAGGGTATTATCTCAACAGGAAAATCAACTCACTTAAGATTGATCTAGATGTTATTGTTGAGGTTGATCTCTACAAAATTGAACCATGGGACATACAAGATAAATGCAAGCTAGGGTATGAGCAACAGAATGAGTGGTACTTTTTCAGCCACAAAGATAAGAAGTATCCAACAGGAACAAGAACTAATAGAGCTACTGCAGCTGGATTCTGGAAAGCAACTGGAAGAGATAAAGCTGTAACTTCCAAGAATAGAATCATAGGAATGAGAAAAACCCTTGTCTTCTACAAAGGACGTGCCCCTAATGGAAGAAAAACTGATTGGATTATGCATGAATATAGGCATCAAACCTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGTAGAGCATTTAAAAAGCCAAGTCCAAGTCACAGGCCAGGTTATGAACCATGGTATAGCAATCAGCAACAACCACAATATTTCAGAGATAATATTCAAATTCAAAGCTATGCAACAACAAGACCTTTATCAATCACAGATCTTTTGCATGAAGATAGTCCAACAACAATAGAATGTAGCCAACAACAACATCACATTAATGGTCTCATCACAAATGAAGAATATTGCAGTGAAGATAGAAGCAATGATAATAACAATAATGGACAAGTGATTGATTGGAAAAGTTTGGACAACTTGTTCACTTCACAGTTTACAGATACAGCTAATTACTTTTCACATCAAAATAACTTGCCATTGATGATAACTCATAGCAATAACCAGAATGAGCTACAATCTCAAAATCAAGTTAATAATATCTTGGGATGCTTTCCTGATTCATAA 930 0.3634 MTSTQISERSSSSMDMESSVPPGFRFHPTEEELVGYYLNRKINSLKIDLDVIVEVDLYKIEPWDIQDKCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFKKPSPSHRPGYEPWYSNQQQPQYFRDNIQIQSYATTRPLSITDLLHEDSPTTIECSQQQHHINGLITNEEYCSEDRSNDNNNNGQVIDWKSLDNLFTSQFTDTANYFSHQNNLPLMITHSNNQNELQSQNQVNNILGCFPDS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02671 309 ProSiteProfiles NAC domain profile. 20 169 IPR003441 GO:0003677|GO:0006355
Vifa3g02671 309 SUPERFAMILY NAC domain 13 169 IPR036093 GO:0003677|GO:0006355
Vifa3g02671 309 FunFam NAC domain-containing protein 29 173 - -
Vifa3g02671 309 MobiDBLite consensus disorder prediction 1 22 - -
Vifa3g02671 309 Gene3D NAC domain 29 172 IPR036093 GO:0003677|GO:0006355
Vifa3g02671 309 MobiDBLite consensus disorder prediction 1 18 - -
Vifa3g02671 309 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Vifa3g02671 309 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02671 Vifa-Chr3 735711094 735713420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02671 16 309 NAC Transcription Factor Family AT1G71930 51.198 4.34e-110 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa3g02671 NAM 3.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02671 - - gmx:100811057 429.483