LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g02666	ATGGGAGATACCAACTTTACTAAAGAGGAAGATAACAAAAGCAATGTCTCCTCTGAAGACAGTGCTTGCCTTTCAGCAATGGTACTTACCACTAATCTTGTTTATCCTGCTGTCTTAAATGCTGCTGTTCATCTCAATTTATTTGAGATTATTTCTAATGCAACACCCCCTGGTGCTTTCATCTCCCCATCACAAATTGCTTCTCATCTCCCATCATCAACCCAACACTCCGACTTGTCTAATAGGCTCGACCGAATGTTGCGTTTGCTCACTAGCTATTCCCTTCTCACTTCCTCTACTCGAACTGCTCACAACGGTAGCACTGAGATTGTCTATGGACTTTCGTCGGTAGGAAAATACCTTGTCCCTGATGAAACTAGAGGCTACTTGGCTTCATTCACTACATTTCTATGTTATCCTGCATTGTTACAAGTTTGGATGAATTTTAAGGAAGCAGTGGTTGATGAAGACATTGATTTGTTCAAGAAAGTACATGGAGTGACAAAGTATGAATACATGGGACAAGATAAAAAAATGAACCAAGTATTTAACAAGTCAATGGTTGATGTATGTGCAACGGAGATGAAAAGAATGCTTGAAATATACACTGGATTTGATGGAATATCAACATTGGTTGATGTTGGAGGTGGAAGTGGACAAAATCTGAAAATGATTATATCCAAATATCCATCAATTAAGGGAATTAATTTTGATCTGCCACAGGTTATTGAAAATGCACCACCAATTCCAGGTATTCACCATGTTGGAGGAGATATGTTTCAAAGTGTTCCACAAGGTGATGCCATCATACTAAAAGCTGTATGTCATAATTGGTCTGATCATAAATGCATTCAATTTTTAACCATTTGTCACAAAGCATTGTCACCAAATGGGAAAGTCATTCTTGTGGAATTCATATTGCCAGAACAACCAACATCAACTCAAGAATCAAAACTTGTTTCAACTCTTGACAATCTCATGTTTATCACTGTTGGTGGAAGGGAAAGAACTGAGAAACAATATCAGAATTTGGGAAAACTCTCTGGATTTTCCAAATTCCATGTTGCTTGCCGTGCTTTCTCTTGTTTAGGAGTCATTGAACTTTACAAATGA	1113	0.3792	MGDTNFTKEEDNKSNVSSEDSACLSAMVLTTNLVYPAVLNAAVHLNLFEIISNATPPGAFISPSQIASHLPSSTQHSDLSNRLDRMLRLLTSYSLLTSSTRTAHNGSTEIVYGLSSVGKYLVPDETRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKKVHGVTKYEYMGQDKKMNQVFNKSMVDVCATEMKRMLEIYTGFDGISTLVDVGGGSGQNLKMIISKYPSIKGINFDLPQVIENAPPIPGIHHVGGDMFQSVPQGDAIILKAVCHNWSDHKCIQFLTICHKALSPNGKVILVEFILPEQPTSTQESKLVSTLDNLMFITVGGRERTEKQYQNLGKLSGFSKFHVACRAFSCLGVIELYK	370

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g02666	370	Gene3D	-	32	159	IPR036388	-
	Vifa3g02666	370	CDD	AdoMet_MTases	210	307	-	-
	Vifa3g02666	370	PANTHER	O-METHYLTRANSFERASE	26	353	IPR016461	GO:0008168
	Vifa3g02666	370	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	129	367	IPR029063	-
	Vifa3g02666	370	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	27	370	IPR016461	GO:0008168
	Vifa3g02666	370	FunFam	Caffeic acid O-methyltransferase	124	370	-	-
	Vifa3g02666	370	FunFam	Caffeic acid 3-O-methyltransferase	4	121	-	-
	Vifa3g02666	370	Pfam	O-methyltransferase domain	146	351	IPR001077	GO:0008171
	Vifa3g02666	370	Pfam	Dimerisation domain	38	91	IPR012967	GO:0046983
	Vifa3g02666	370	Gene3D	-	162	198	IPR036388	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g02666	Vifa-Chr3	732947378	732948560	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g02666	18	370	Monolignol Biosynthesis Gene Families	AT5G54160	47.175	2.47e-108	320

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g02666	-		-	ag:AAB48059	608.216

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