Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02660 ATGGGAGATACCAACTTTACTAAAGAGGAAGATAACAAAAGCAATGTCTCCTCTGAAGACAGTGCTTGCCTTTCAGCAATGGTACTTACCACTAATCTTGTTTATCCTGCTGTCTTAAATGCTGCTGTTCATCTCAATTTATTTGAGATTATTTCTAATGCAACACCCCCTGGTGCTTTCATCTCCCCATCACAAATTGCTTCTCATCTCCCATCATCAACCCAACACTCCGACTTGTCTAATAGGCTCGACCGAATGTTGCGTTTGCTCACTAGCTATTCCCTTCTCACTTCCTCTACTCGAACTGCTCACAACGGTAGCACTGAGATTGTCTATGGACTTTCGTCGGTAGGAAAATACCTTGTCCCTGATGAAACTAGAGGCTACTTGGCTTCATTCACTACATTTCTATGTTATCCTGCATTGTTACAAGTTTGGATGAATTTTAAGGAAGCAGTGGTTGATGAAGACATTGATTTGTTCAAGAAAGTACATGGAGTGACAAAGTATGAATACATGGGACAAGATAAAAAAATGAACCAAGTATTTAACAAGTCAATGGTTGATGTATGTGCAACGGAGATGAAAAGAATGCTTGAAATATACACTGGATTTGATGGAATATCAACATTGGTTGATGTTGGAGGTGGAAGTGGACAAAATCTGAAAATGATTATATCCAAATATCCATCAATTAAGGGAATTAATTTTGATCTGCCACAGGTTATTGAAAATGCACCACCAATTCCAGGTATTCACCATGTTGGAGGAGATATGTTTCAAAGTGTTCCACAAGGTGATGCCATCATACTAAAAGCTGTATGTCATAATTGGTCTGATCATAAATGCATTCAATTTTTAACCATTTGTCACAAAGCATTGTCACCAAATGGGAAAGTCATTCTTGTGGAATTCATATTGCCAGAACAACCAACATCAACTCAAGAATCAAAACTTGTTTCAACTCTTGACAATCTCATGTTTATCACTGTTGGTGGAAGGGAAAGAACTGAGAAACAATATCAGAATTTGGGAAAACTCTCTGGATTTTCCAAATTCCATGTTGCTTGCCGTGCTTTCTCTTGTTTAGGAGTCATTGAACTTTACAAATGA 1113 0.3792 MGDTNFTKEEDNKSNVSSEDSACLSAMVLTTNLVYPAVLNAAVHLNLFEIISNATPPGAFISPSQIASHLPSSTQHSDLSNRLDRMLRLLTSYSLLTSSTRTAHNGSTEIVYGLSSVGKYLVPDETRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKKVHGVTKYEYMGQDKKMNQVFNKSMVDVCATEMKRMLEIYTGFDGISTLVDVGGGSGQNLKMIISKYPSIKGINFDLPQVIENAPPIPGIHHVGGDMFQSVPQGDAIILKAVCHNWSDHKCIQFLTICHKALSPNGKVILVEFILPEQPTSTQESKLVSTLDNLMFITVGGRERTEKQYQNLGKLSGFSKFHVACRAFSCLGVIELYK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02660 370 Gene3D - 32 159 IPR036388 -
Vifa3g02660 370 CDD AdoMet_MTases 210 307 - -
Vifa3g02660 370 PANTHER O-METHYLTRANSFERASE 26 353 IPR016461 GO:0008168
Vifa3g02660 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 367 IPR029063 -
Vifa3g02660 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 370 IPR016461 GO:0008168
Vifa3g02660 370 FunFam Caffeic acid O-methyltransferase 124 370 - -
Vifa3g02660 370 FunFam Caffeic acid 3-O-methyltransferase 4 121 - -
Vifa3g02660 370 Pfam O-methyltransferase domain 146 351 IPR001077 GO:0008171
Vifa3g02660 370 Pfam Dimerisation domain 38 91 IPR012967 GO:0046983
Vifa3g02660 370 Gene3D - 162 198 IPR036388 -
Vifa3g02660 370 Gene3D Vaccinia Virus protein VP39 180 359 IPR029063 -
Vifa3g02660 370 SUPERFAMILY "Winged helix" DNA-binding domain 18 125 IPR036390 -
Vifa3g02660 370 PIRSF O-mtase 4 370 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02660 Vifa-Chr3 732761334 732762516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02660 18 370 Monolignol Biosynthesis Gene Families AT5G54160 47.175 2.47e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02660 - - ag:AAB48059 608.216