Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02655 ATGGGAGATACCAACTTTACTAAAGAGGAAGATAACAAAAGCAATGTCTCCTCTGAAGACAGTGCTTGCCTTTCAGCAATGGTACTTACCACTAATCTTGTTTATCCTGCTGTCTTAAATGCTGCTGTTCATCTCAATTTATTTGAGATTATTTCTAATGCAACACCCCCTGGTGCTTTCATCTCCCCATCACAAATTGCTTCTCATCTCCCATCATCAACCCAACACTCCGACTTGTCTAATAGGCTCGACCGAATGTTGCGTTTGCTCACTAGCTATTCCCTTCTCACTTCCTCTACTCGAACTGCTCACAACGGTAGCACTGAGATTGTCTATGGACTTTCGTCGGTAGGAAAATACCTTGTCCCTGATGAAACTAGAGGCTACTTGGCTTCATTCACTACATTTCTATGTTATCCTGCATTGTTACAAGTTTGGATGAATTTTAAGGAAGCAGTGGTTGATGAAGACATTGATTTGTTCAAGAAAGTACATGGAGTGACAAAGTATGAATACATGGGACAAGATAAAAAAATGAACCAAGTATTTAACAAGTCAATGGTTGATGTATGTGCAACGGAGATGAAAAGAATGCTTGAAATATACACTGGATTTGATGGAATATCAACATTGGTTGATGTTGGAGGTGGAAGTGGACAAAATCTGAAAATGATTATATCCAAATATCCATCAATTAAGGGAATTAATTTTGATCTGCCACAGGTTATTGAAAATGCACCACCAATTCCAGGTATTCACCATGTTGGAGGAGATATGTTTCAAAGTGTTCCACAAGGTGATGCCATCATACTAAAAGCTGTATGTCATAATTGGTCTGATCATAAATGCATTCAATTTTTAACCATTTGTCACAAAGCATTGTCACCAAATGGGAAAGTCATTCTTGTGGAATTCATATTGCCAGAACAACCAACATCAACTCAAGAATCAAAACTTGTTTCAACTCTTGACAATCTCATGTTTATCACTGTTGGTGGAAGGGAAAGAACTGAGAAACAATATCAGAATTTGGGAAAACTCTCTGGATTTTCCAAATTCCATGTTGCTTGCCGTGCTTTCTCTTGTTTAGGAGTCTTTGAACTTTACAAATGA 1113 0.3792 MGDTNFTKEEDNKSNVSSEDSACLSAMVLTTNLVYPAVLNAAVHLNLFEIISNATPPGAFISPSQIASHLPSSTQHSDLSNRLDRMLRLLTSYSLLTSSTRTAHNGSTEIVYGLSSVGKYLVPDETRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKKVHGVTKYEYMGQDKKMNQVFNKSMVDVCATEMKRMLEIYTGFDGISTLVDVGGGSGQNLKMIISKYPSIKGINFDLPQVIENAPPIPGIHHVGGDMFQSVPQGDAIILKAVCHNWSDHKCIQFLTICHKALSPNGKVILVEFILPEQPTSTQESKLVSTLDNLMFITVGGRERTEKQYQNLGKLSGFSKFHVACRAFSCLGVFELYK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02655 370 CDD AdoMet_MTases 210 307 - -
Vifa3g02655 370 PANTHER O-METHYLTRANSFERASE 26 353 IPR016461 GO:0008168
Vifa3g02655 370 Gene3D Vaccinia Virus protein VP39 122 370 IPR029063 -
Vifa3g02655 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 370 IPR016461 GO:0008168
Vifa3g02655 370 PIRSF O-mtase 4 370 IPR016461 GO:0008168
Vifa3g02655 370 Pfam Dimerisation domain 38 91 IPR012967 GO:0046983
Vifa3g02655 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 366 IPR029063 -
Vifa3g02655 370 FunFam Caffeic acid 3-O-methyltransferase 4 121 - -
Vifa3g02655 370 Gene3D - 3 121 IPR036388 -
Vifa3g02655 370 FunFam Caffeic acid O-methyltransferase 124 370 - -
Vifa3g02655 370 Pfam O-methyltransferase domain 146 351 IPR001077 GO:0008171
Vifa3g02655 370 SUPERFAMILY "Winged helix" DNA-binding domain 18 125 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02655 Vifa-Chr3 732623732 732624914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02655 18 370 Monolignol Biosynthesis Gene Families AT5G54160 46.893 1.18e-107 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02655 - - ag:AAB48059 607.831