Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02651 ATGAACATGGTCAGGTATGAGTACACAACAACTTTCCTAGTTATGTTTTTGTTATGTCCTATGGTTTTCTCTTTGTTGTCTCAAAACCAAACACAAACCATGAACACTCTCTCCAATCTTGTTAACAACCCTGATTGGAATACCAACAAGCACCCTAATCCATGTACATGGAAAGGTGTCACTTGTGACCTTACCAATTCAACTGTCATCAAAATTGTTTTGTCTGGTTTTTCTCTCTCTTCACAGTCTCTTCCTGTTTTCTGCAAAATTGAAACTTTGCAGCACCTTGATGTTTCTAATAACAATCTGAACTCTATCCCAGATGGGTTTATTTCCGCTTGTGGAAAAATTGTGAGTTTAAAGCTTTTGAACTTTAGTGGAAATGTGTTGAGTGGTGTTTTGCCTACTTTTCATGGTTTTGGTGGATTGGAAACACTTGACATGTCTTTCAATCTCTTGAAAGGAAGCATTGATTTGCAGTTAGATGGAATGGTTAGTCTCAAGTCTCTTAATCTCAGTAGCAATCGGTTCTCTGGGAAATTTCCAACTAACCTTGGAAAGTCTATGGTTTTGGAGCAGCTTGTGCTTTCAAACAATCATTTTCAAGGAACATTCCCTGAACAAATTTTGAGCTATAAAAATTTGACTGTGATTGATTTTAAGTCAAATTTGCTTTCTGGGTTTCTTCCTGTAAATATTGAAAATCTTTCCAAATTGGAAATTTTGAGTCTTTCCTCTAATAATCTAGTTGGCCAAATCCCAAAGACAATTATGAATATCAGATCTCTTGTAAGATTTGCAGCTAATCAAAATCATTTTATTGGTTCTGTTCCTCCTGGAATTACAAAATTTCTAAATAGTTTGGATCTTAGTTACAATAATTTATCCCAGTCTATTCCAGAAGGCCTTTTATCTCCATCACAGCTAATGCTTGTAGATTTGTCCTATAACAATTTACAAGGGCCTGTGCCTGCAAATATTTCACCTAGTTTAGTCAGGTTAAGATTAGGGGGAAACTCCTTGACAGGAGAGGTTCCTTCGATCACTTGCAATGAAGCCGAACACAATTTGACCTACATGGAGCTGGATAATAACCAGTTGGCAGGTTTGATACCGCCTGAATTAGGCTCTTGTAAGAAATTGGCCTTGTTGAATTTGGCTGAGAATCAGTTGACGGGTGCATTGCCACCAGAACTTGGAAATCTTAACAGTCTTCAAGTCTTGAAGCTTCAAACGAACAAGCTTAATGGTACTATTCCAATTCAAATTTCTCAATTGCAAAAGTTGTCTACCTTGAACTTGAGCCAGAATTCTCTGGATGGACCGATTCCGTCTGAGATGACAGCAAACCTTACATTGCTTTACTTGCAAGGGAACAATCTTAACGGGTCTATACCTCCGTCTATTGGAAACTTGGGAAAACTTTTAGAACTCCAGCTTGGAGAAAACCAGCTGAGTGGTGATATTCCAAAAATGCCTTTGAGTCTACAGATTGCATTGAATCTAAGCAGCAATCACTTTAGTGGAAATATTCCTTCAAGTTTCAGCGATTTGGTTAACCTCGAAGTTTTGGATCTCTCAAATAACAATTTCTCCGGTGAAATTCCTGTGTCTTTGACCAAATTGACTGCATTGACACAGTTGCAGCTTTCAAATAATCGTCTATCAGGAGACCTTCCATCATTTGCTCCGTACGTTAATGTTAATACGAGAGGAACCGGTGTCATGAACAATACTAATGTCCCAGACAACAATTTTTCAAGAACAAAAAATAGGAAATCTGTTGTCGCAGCTGTTCTTATTGCAATTGCTGCTGCTATTTTTGTGGTCGGTGTGGTCACCCTGCTGGTTGTATTGATTTCACGACACTGTTATAGGGGTAACAATGAGCGCGTACAGGCAAGTGAAGGTGAAAATTTTGACCTTCAGATCATCCAGAGTAATTTGTTAACTACAAACGGGATCCATAGATCAAACATTGACTTCTCCAAGACCATGGAAGCTGTTGCTGAAACATCAAATGTAACTCTGAAAACCAAGTTTTCAACTTACTATAAGGCCATTATGCCATCTGGATCGATCTATTTCGCCAAGAAGCTGAACTGGTGTGACAAAATCTTCCCTGTGAGTAGTCTTGATAGATTCGGGAAAGAGCTAGAAGTATTGGCAAAGTTGAACAATTCAAATGTGATGATTCCTCTAGGCTATATTGTGTCCACTAACAATGCTTATGTATTATACGAGTTTCTCTCCAACGGATCTCTCTTTGATGTGCTTCATGGAAGCATGGAAAACTCTTTAGATTGGGCTAGCAGATATAGCATAGCTGTTGGTGTGGCTCAAGGTCTATCCTTTCTTCATGGATGTGCCTCTGGTCCAATACTTCTCCTTGATTTGTCAAGTAAGAGTATTATGCTGAAATCACTCAAGGAGCCTCTAGTCGGCGATATTGAACACTACAAGGTGATCGATCCTTCAAAAAGTTCTGGGAGTTTTTCTGCAGTTGCTGGTTCTGTTGGCTACATTCCTCCAGAGTATGCGTACACGATGCGAGTAACAATGGCAGGGAATGTGTATAGCTTTGGGGTCATTCTACTGGAATTGCTGACAGGAAAACCTGCAGTGACTGAGGGGACTGAATTGGTGAAGTGGGTTACACGTAATTCAAGAAATCAAGATTACTTCCTTGATTCAAATGTTAGTAGAACATCACAGGCTGTTAGAAACCAAATGCTTGCAATTCTGGAGATTGCTCTTGTTTGTGTAAGCACATCCACTGATGCAAGACCAAAGATGAAGACTGTGCTAAGAATGTTGCTGAATGCCAGATAA 2832 0.3916 MNMVRYEYTTTFLVMFLLCPMVFSLLSQNQTQTMNTLSNLVNNPDWNTNKHPNPCTWKGVTCDLTNSTVIKIVLSGFSLSSQSLPVFCKIETLQHLDVSNNNLNSIPDGFISACGKIVSLKLLNFSGNVLSGVLPTFHGFGGLETLDMSFNLLKGSIDLQLDGMVSLKSLNLSSNRFSGKFPTNLGKSMVLEQLVLSNNHFQGTFPEQILSYKNLTVIDFKSNLLSGFLPVNIENLSKLEILSLSSNNLVGQIPKTIMNIRSLVRFAANQNHFIGSVPPGITKFLNSLDLSYNNLSQSIPEGLLSPSQLMLVDLSYNNLQGPVPANISPSLVRLRLGGNSLTGEVPSITCNEAEHNLTYMELDNNQLAGLIPPELGSCKKLALLNLAENQLTGALPPELGNLNSLQVLKLQTNKLNGTIPIQISQLQKLSTLNLSQNSLDGPIPSEMTANLTLLYLQGNNLNGSIPPSIGNLGKLLELQLGENQLSGDIPKMPLSLQIALNLSSNHFSGNIPSSFSDLVNLEVLDLSNNNFSGEIPVSLTKLTALTQLQLSNNRLSGDLPSFAPYVNVNTRGTGVMNNTNVPDNNFSRTKNRKSVVAAVLIAIAAAIFVVGVVTLLVVLISRHCYRGNNERVQASEGENFDLQIIQSNLLTTNGIHRSNIDFSKTMEAVAETSNVTLKTKFSTYYKAIMPSGSIYFAKKLNWCDKIFPVSSLDRFGKELEVLAKLNNSNVMIPLGYIVSTNNAYVLYEFLSNGSLFDVLHGSMENSLDWASRYSIAVGVAQGLSFLHGCASGPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSSGSFSAVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKPAVTEGTELVKWVTRNSRNQDYFLDSNVSRTSQAVRNQMLAILEIALVCVSTSTDARPKMKTVLRMLLNAR 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02651 943 Gene3D Phosphorylase Kinase; domain 1 643 749 - -
Vifa3g02651 943 Gene3D Ribonuclease Inhibitor 351 448 IPR032675 -
Vifa3g02651 943 Gene3D Ribonuclease Inhibitor 282 350 IPR032675 -
Vifa3g02651 943 Gene3D Ribonuclease Inhibitor 24 183 IPR032675 -
Vifa3g02651 943 Gene3D Ribonuclease Inhibitor 184 281 IPR032675 -
Vifa3g02651 943 Pfam Protein tyrosine and serine/threonine kinase 712 938 IPR001245 GO:0004672|GO:0006468
Vifa3g02651 943 SUPERFAMILY RNI-like 252 559 - -
Vifa3g02651 943 SUPERFAMILY L domain-like 34 347 - -
Vifa3g02651 943 ProSiteProfiles Leucine-rich repeat profile. 520 543 IPR001611 GO:0005515
Vifa3g02651 943 PANTHER LEUCINE RICH REPEAT KINASE 2 67 206 - -
Vifa3g02651 943 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 28 184 - -
Vifa3g02651 943 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 230 323 - -
Vifa3g02651 943 SUPERFAMILY Protein kinase-like (PK-like) 681 939 IPR011009 -
Vifa3g02651 943 Gene3D Ribonuclease Inhibitor 498 579 IPR032675 -
Vifa3g02651 943 Gene3D Ribonuclease Inhibitor 449 497 IPR032675 -
Vifa3g02651 943 PRINTS Leucine-rich repeat signature 518 531 - -
Vifa3g02651 943 PRINTS Leucine-rich repeat signature 93 106 - -
Vifa3g02651 943 Pfam Leucine rich repeat N-terminal domain 45 63 IPR013210 -
Vifa3g02651 943 SMART LRR_typ_2 518 541 IPR003591 -
Vifa3g02651 943 SMART LRR_typ_2 236 260 IPR003591 -
Vifa3g02651 943 SMART LRR_typ_2 402 426 IPR003591 -
Vifa3g02651 943 SMART LRR_typ_2 448 472 IPR003591 -
Vifa3g02651 943 SMART LRR_typ_2 282 306 IPR003591 -
Vifa3g02651 943 SMART LRR_typ_2 542 564 IPR003591 -
Vifa3g02651 943 SMART LRR_typ_2 164 188 IPR003591 -
Vifa3g02651 943 SMART LRR_typ_2 90 113 IPR003591 -
Vifa3g02651 943 SMART LRR_typ_2 117 139 IPR003591 -
Vifa3g02651 943 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 750 943 - -
Vifa3g02651 943 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 638 749 - -
Vifa3g02651 943 Gene3D Transferase(Phosphotransferase) domain 1 750 943 - -
Vifa3g02651 943 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 325 592 - -
Vifa3g02651 943 ProSiteProfiles Leucine-rich repeat profile. 92 113 IPR001611 GO:0005515
Vifa3g02651 943 ProSiteProfiles Protein kinase domain profile. 670 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02651 943 Pfam Leucine rich repeat 500 555 IPR001611 GO:0005515
Vifa3g02651 943 Pfam Leucine rich repeat 92 153 IPR001611 GO:0005515
Vifa3g02651 943 Pfam Leucine rich repeat 191 249 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02651 Vifa-Chr3 731619398 731622339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02651 143 939 Receptor kinase-like Gene Family AT2G41820 38.425 1.29e-148 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa3g02651 PK_Tyr_Ser-Thr 1.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02651 - - gmx:100796647 1189.87