Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02648 ATGCAAGACATTGGAATTTCACAAACACAAGCTTTAAGAAGGACAATGGAGATATATTCTAATTCTACTCGTTTCGCTCTTTCTTGCAATACAACCGCTAAGATTATTAGGCCGATTCAGAGTAGGTGTGCAATTGTGAGATTTTCGCGACTATCTGATCAAGAGATACTTGGTCGTCTCATGGTTGTGATTCAAGCTGAGAAGGTTCCTTATGTTCCTGAGGGAATTGAGGCTATCATTTTCACTGCTGATGGGGATATGAGGCAGGGATTGAATAACTTGCAAGCAACATACAGCGGTTTCTGGTTTGTCAATCAAGCAAATGTTTTCAAGGTTTGTGACCAGCCACATCCACTTCATGTGAAGAATATGGTGCGCAATGTAATTGAATGGAATTTTGATGAGGCTTGTTCAGGGCTCAAACAATTCCTATGGTTTCAGAGTCAATTGCTGGGCGAGATAAATCTTCCATACCTTTGCTTAAAAGCTTCCAGCATTGCTACTCCAAAGAAGGCTGATAACGGGTCTTCCAAATCTCCGCATAACCTCAGCTCTTCTCAAAACCAAGTTTCTGCTTATAAGAAGAAGCTAGCGTCTTCAGGTGAAAATTCCAAGACTACTCAAAAAAAAAGAACATCTTATTGCAGCTGCCCAGGCAAAAATGGAAAAGCTCATTCTCAGTATCCTTCTTCTGATATTCATGATGTCCAGGAGGGAACTCCTAGCCCATCCACAGTTCAGCCCTGCATAGAAAATGGGAAACAGAAAATTAATTAA 777 0.408 MQDIGISQTQALRRTMEIYSNSTRFALSCNTTAKIIRPIQSRCAIVRFSRLSDQEILGRLMVVIQAEKVPYVPEGIEAIIFTADGDMRQGLNNLQATYSGFWFVNQANVFKVCDQPHPLHVKNMVRNVIEWNFDEACSGLKQFLWFQSQLLGEINLPYLCLKASSIATPKKADNGSSKSPHNLSSSQNQVSAYKKKLASSGENSKTTQKKRTSYCSCPGKNGKAHSQYPSSDIHDVQEGTPSPSTVQPCIENGKQKIN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02648 258 CDD HLD_clamp_RFC 51 113 - -
Vifa3g02648 258 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 10 152 - -
Vifa3g02648 258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 99 IPR027417 -
Vifa3g02648 258 Gene3D - 52 115 - -
Vifa3g02648 258 MobiDBLite consensus disorder prediction 170 258 - -
Vifa3g02648 258 FunFam Replication factor C subunit 4 52 115 - -
Vifa3g02648 258 Gene3D - 2 49 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02648 Vifa-Chr3 731585270 731586852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02648 10 143 Core DNA Replication Machinery Family AT1G63160 84.328 5.88e-82 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02648 K10755 - gmx:100781364 252.292