Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02647 ATGAATCCGACAGGAAGCTTGTGTGCTAACAACTGGGCAAGGTCCTCTTTGTTAGTCCCTCCTGGGAATGGGTTGCAGACAAATCTGTGCTCGGATCCTTCATCTTTCTACGGGATTGGAATTGAAACGCCTTTCAAAGAAATCATTGAACCTTCTCGAACTCAGTCTGTGATTCCAGGTGAATCTAACAAAGATATTAAGATCACTGATCAGGAAGCCAGTAAACTTCAAGATTGGGATCCAAGTGTGATGTTGAATAACCTTTCGTTCCTGGAAGAAAAAATTCATCAGCTCCAGGAGTTGATATCTACTGCAGGCACGAGTAATGGTGTTCAGCCACAAAATAATGTCGGAAATAAATTGTTTGATCAGTCCGTTCATAAAGATGTACCGAATAATTGCGAAATGGAGCAAAACCATAATATGGAAGAACATGAACATAAAGATGAAGAAGATATGGAAGAGGGAGAGAATCTTCCACCTGGTTCGTATGAGATTTTACAACTAGAGAAAGAAGAAATCCTTGCACCCCACACACATTTCTGTACAATATGTGGCAAGGGGTTCAAGAGGGATGCGAATCTCCGGATGCACATGCGAGGCCATGGTGATGAGTACAAAACTCCGGCAGCCCTTGCAAAACCACATAAAGAAACTGGGTCTGAACTGAAGCTTATCAAGAGGTATTCGTGCCCTTATGGTGGCTGCAAGCGTAACAAGGATCACAAGAAATTTCAGCCTCTGAAAACTATTTTATGTGTGAAAAACCACTACAAAAGAACACACTGCGATAAGAGTTACACTTGCAGCAGATGCCACACCAAGAAGTTTTCAGTCATCGCAGATCTCAAAACTCATGAAAAACACTGTGGCAAAGATAAATGGCTCTGCTCATGTGGCACAACATTTTCAAGAAAAGACAAGCTTTTCGGACACATCGCTCTTTTCCAAGGCCATACACCGGCTATTCCTTTGGAAGACAATAAAGGACTTGCCGAGCCACCTGATCGATGTGTCACCAAAGAAAATACCGCCATGGTAGGGAGCATGAACTTCTGTTTTGGATCAAACCCTTCAAGTGAAAACGGAGTTGATAACATCATGGACGTGAAAGATTCAGAAGGCTCTTTCTCGTTTCTCATGCCGAGTTCGTTTAATTATGCTCCTAAATCTGGCGGTGAATCATGTCCTGACAATCTGTAA 1203 0.4248 MNPTGSLCANNWARSSLLVPPGNGLQTNLCSDPSSFYGIGIETPFKEIIEPSRTQSVIPGESNKDIKITDQEASKLQDWDPSVMLNNLSFLEEKIHQLQELISTAGTSNGVQPQNNVGNKLFDQSVHKDVPNNCEMEQNHNMEEHEHKDEEDMEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSELKLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEDNKGLAEPPDRCVTKENTAMVGSMNFCFGSNPSSENGVDNIMDVKDSEGSFSFLMPSSFNYAPKSGGESCPDNL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02647 400 SMART c2h2final6 267 289 IPR013087 -
Vifa3g02647 400 SMART c2h2final6 229 262 IPR013087 -
Vifa3g02647 400 SMART c2h2final6 180 202 IPR013087 -
Vifa3g02647 400 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Vifa3g02647 400 Gene3D Classic Zinc Finger 164 233 - -
Vifa3g02647 400 SUPERFAMILY beta-beta-alpha zinc fingers 178 205 IPR036236 -
Vifa3g02647 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Vifa3g02647 400 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 120 345 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02647 Vifa-Chr3 729825675 729827183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02647 148 398 C2H2 Transcription Factor Family AT1G34370 66.434 5.36e-126 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g02647 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02647 - - gmx:100801536 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02647 3 729825675 729827183 Vifa3g02647 3 729825675 729827183 ECH