Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02645 ATGGAAGATTCAGAAGAAGATGAGCTTCTAAATCTCAGCCTCTCAGTTAACAGAGAAAGAAAAAAGAAAGGAAAAATCATCACAAGAGAAAACAACAACACTTTTTCTATGATTTGTACCAATAGAAACTCCTACGAAGGGTATGAAGCAAAAATCTTCAGACTTCTTCAAATGAGAGAACAAATGCTCCGAAAAACGACTCTCAACCTGGAAGACTCAAACGGTCTTCCATTAATTCACCTCCTTCTCACAACAGCAACTTGCGTCGACGAAAAGAACTTGGATTCGTCTCTGGAAAACCTAACAGATCTTTACCAAACCGTCTCAGTCACCGGAGATTCAGTCCAACGAGTCGTCGCTTATTTTACCGACGGCTTAACCGCGAAACTCCTCACAAAAAAATCACCATTCTACGAAATGTTAATGGAAGAACCGACAACCGACGAAGAGTTTCTCGCATTCACAGATCTCTACCGAGTCTCTCCCTATTACCAATTCGCTCATTTCACTGCAAATCAAGCTATCTTAGAGTGCTTCGAGAAAGAAGAGGAAAGAAACAACCGGTCCATTCACGTGATCGATTTCGATGTCTCATACGGTTTTCAATGGCCTTCACTGATTCAATCACTCTCCGAAAAAGCAACAAGCACAAACAGAATCTCACTCAGAATAACCGGATTCGGTAAGAATTTAAAGGAGCTTCAAGAAACTGAATCTAGGTTAATTAGTTTCTCAAAAGGCTTCCAAAACATTGTTTTTGAATTTCAAGGTTTGTTAAGAGGATCGAGAATAATTAACCTAAGGAAGAAGAAAAACGAAACTGTGGCGGTTAATTTAGTTTCTTATCTCAACAAATTAACTTGTTTATTGAAAATTTCTGACACATTGGGATTTGCTCATTCTCTTAACCCTTCCATTGTGGTGATTGTTGAACAAGAAGGTTCTAAGAATCCTTCTAGAACGTTCTTGTCAAGATTCACAGACACATTGCATTATTTTGCCGCGATGTTCGATTCGCTTGATGATTGTTTACCATTGGAGAGCATTGAGAGGTTGAGAATAGAGAAGAAGTTTTTTGGTAAAGAGATTAAATCCATGCTGAATAACTATGATATAGACGATGGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTGATTGTGCAAAATATGAGAAAATGGAAACATGGAAACTGAGAATGGAGAATCATGGATTTGTTGGGATGAAAATGAGTTCCAAGTGTTTGATACAAGCAAAGTTGTTGCTGAAGATGAGAACACATTATTGTCCACTTCAGTTTGAGGAAGAAGGTGGTGGTGGTTTCAGGGTTTCTGAAAGAGATGATGGAAAAGCTATTTCATTAGGATGGCAAAATAGGTTTTTGCTTACTGTATCAGCATGGCAATCCCTTTGA 1413 0.3892 MEDSEEDELLNLSLSVNRERKKKGKIITRENNNTFSMICTNRNSYEGYEAKIFRLLQMREQMLRKTTLNLEDSNGLPLIHLLLTTATCVDEKNLDSSLENLTDLYQTVSVTGDSVQRVVAYFTDGLTAKLLTKKSPFYEMLMEEPTTDEEFLAFTDLYRVSPYYQFAHFTANQAILECFEKEEERNNRSIHVIDFDVSYGFQWPSLIQSLSEKATSTNRISLRITGFGKNLKELQETESRLISFSKGFQNIVFEFQGLLRGSRIINLRKKKNETVAVNLVSYLNKLTCLLKISDTLGFAHSLNPSIVVIVEQEGSKNPSRTFLSRFTDTLHYFAAMFDSLDDCLPLESIERLRIEKKFFGKEIKSMLNNYDIDDGGGGGGGGGGVDCAKYEKMETWKLRMENHGFVGMKMSSKCLIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDDGKAISLGWQNRFLLTVSAWQSL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02645 470 ProSiteProfiles GRAS family profile. 69 468 IPR005202 -
Vifa3g02645 470 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 74 463 IPR005202 -
Vifa3g02645 470 Pfam GRAS domain family 78 468 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02645 Vifa-Chr3 728941473 728942885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02645 86 467 GRAS Transcription Factor Family AT3G54220 33.418 1.13e-51 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa3g02645 GRAS 2.9e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02645 - - gmx:100809458 741.495