Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02641 ATGTCTGGCAATGGAGGTTGCACCGTTTACATAGGCAATCTGGATGAGAGGGTTACAGACAGGGTCTTGTATGATATATTAATTCAAGCCGGACGAGTGGTGGACTTGCACATTCCTAAAGATAAGGAAACTGAGAAACCTAAAGGCTTTGCCTTTGCAGAGTTTGAAACTGAGGAGATTGCAGAATATGCTGTCAAACTTTTCTCAGGCCTTGTAACACTGTACAAACGGACACTAAAGTTTGCGTCTGCTAATAAGGACAAAAACACCCCTAATAGTTCTCCAGCTACTACACCCACTTCAAATTCTTCTCAACGACCAAGGCCTTACCCTGTGCAAGTAACTAGTTCAGAGAATTTTCAGCATTCCCCTAGGCAATCAATACCGAGCCGATTCTCAGATCATGCGGTGAATTATTCTCACGTTCCACCTCCTCATCGTGTAACCGATCAATTTAGTGGGTATGGATCTCACTACAGTGGCAACCAGTATGATTACAGTCGGAGAGCTTTTGGGGAAGCATTGGATAGCCCTAACGGTTCTAGCGGTTCTAGGTCACGCCGCCCTGATGGAATTAGCCCAGATTAA 588 0.449 MSGNGGCTVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKETEKPKGFAFAEFETEEIAEYAVKLFSGLVTLYKRTLKFASANKDKNTPNSSPATTPTSNSSQRPRPYPVQVTSSENFQHSPRQSIPSRFSDHAVNYSHVPPPHRVTDQFSGYGSHYSGNQYDYSRRAFGEALDSPNGSSGSRSRRPDGISPD 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02641 195 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 186 - -
Vifa3g02641 195 SMART rrm1_1 8 82 IPR000504 GO:0003723
Vifa3g02641 195 MobiDBLite consensus disorder prediction 85 195 - -
Vifa3g02641 195 Gene3D - 2 96 IPR012677 -
Vifa3g02641 195 SUPERFAMILY RNA-binding domain, RBD 4 100 IPR035979 GO:0003676
Vifa3g02641 195 MobiDBLite consensus disorder prediction 85 134 - -
Vifa3g02641 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Vifa3g02641 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02641 4 87 Eukaryotic Initiation Factors Gene Family AT1G49760 27.381 7.72e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02641 K12831 - gmx:100784532 272.707