Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02628 ATGGAACACAATATCAAAACCCATCATCTTCCCATTCACACCATTCTTTCAAACTCTCCTCCATCTTCATCTTCCTCACCTCCTTTACAATCTCCCACACCTTTTCCTTCATTGCTTTCTCAATATTCTCCTCCCTCCACCGCCCCCGCCCCCGCCGCCGCTGCTCCTCCTCCACCAATTGTTGTTAGCCCTTGTGCTGCTTGCAAGATCCTTCGTCGAAGGTGTGTCGAAAAGTGTGTCTTAGCTCCATATTTTCCTCCCACCGATCCACTCAAGTTCACTATTGCTCATAGAGTCTTTGGAGCAAGCAACATCATTAAGTTTTTGCAGGAACTACCTGAACCTCAAAGAGCAGATGCAGTGAGCAGCATGGTATATGAAGCAAATGCTAGAATAAGGGATCCAGTCTATGGTTGTGCAGGTGCAATATGTCAACTTCAAAAGCAAGTTAATGAGCTACAAACACAGCTAGCGAAAGCACAAGCTGAGTTAGTCAACATGCATTGCCAACAAGCAAATCTAGTAGCACTAATTTGCATGGAAATGAGTACTCAGTCATCACCATCATCATCACAAGACCATAACATAATCATCAATCAACCTCAACCTCATGTTGACATGAGTTGCTTCTTAGAAGACAACACTTTTGGGTCTGCTTGGGAGCCTCTATGGACATGA 678 0.4454 MEHNIKTHHLPIHTILSNSPPSSSSSPPLQSPTPFPSLLSQYSPPSTAPAPAAAAPPPPIVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNELQTQLAKAQAELVNMHCQQANLVALICMEMSTQSSPSSSQDHNIIINQPQPHVDMSCFLEDNTFGSAWEPLWT 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02628 225 ProSiteProfiles LOB domain profile. 63 164 IPR004883 -
Vifa3g02628 225 Pfam Lateral organ boundaries (LOB) domain 64 161 IPR004883 -
Vifa3g02628 225 Coils Coil 143 170 - -
Vifa3g02628 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 63 193 - -
Vifa3g02628 225 MobiDBLite consensus disorder prediction 11 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02628 Vifa-Chr3 716853177 716854683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02628 60 225 AS2 family AT1G07900 64.773 1.12e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa3g02628 LOB 6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02628 - - gmx:100806667 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02628 3 716853177 716854683 Vifa3g02628 3 716853177 716854683 ECH