Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02626 ATGGAAGAAGATGATTACGAGGAGTATATTCCCGTGGCAAAGCGTCGCGCTATGGAGGCACAGAAAATTCTCCAACGCAAAGGGAAGGCTTCGGCTGTGATCGACGATGAAACGGAGAAAGTAGGAGTGGTTGAAACGAAGCCGAGTCTACTTGTTAAGGCATCGCAGTTGAAGAAAGACCAACCTGAGATCAGTGTTACCGAGCAGATTGTTCAACAGGAGAAGGAGATGATTGATAATTTATCCGACAAGAAAACCCTTATGTCTGTTCGCGAATTAGCTAAGGGGATTACTTATACCGAGCCTTTGCCTACTGGGTGGAAGCCTCCTTTGCATATAAGACGGATGTCCAAGAAAGATTGCGAATTTATTCAGAAACAGTGGCATATTATTGTTAACGGTGAAGATATTCCGCCCCCGATTAAGAATTTTAAGGACATGAGGTTTCCGGATCCCATTCTGAAGATGTTGAAAACTAAGGGGATTGTGCAGCCTACGCCCATTCAGGTGCAGGGTCTTCCTGTTATTTTATCTGGGAGGGATATGATTGGGATTGCTTTCACGGGTTCGGGTAAAACTTTGGTTTTTGTGCTTCCGATGATTATGATGGCCATGCAGGAGGAGATTATGATGCCTTTGGTTCCCGGGGAGGGTCCGTTTGGTTTGATTATTTGTCCGTCCAGGGAATTGGCTAGGCAAACTTATGAAGTTATTCAACAGTTCTTGTTGCCGTTGAAGGAAGCCGGATATCCGGAGCTCAGGCCTTTGCTTTGTATCGGTGGAATTGATATGAGATCACAGCTTGAGATTGTCAAGAAGGGGGTTCATTTGGTTGTTGCTACGCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAAAAAATGAATCTGGATAACTGCAGGTATTTGACATTAGATGAGGCTGATCGATTGGTAGATTTGGGATTTGAAGATGATATAAGAGAAGTTTTTGATCACTTTAAAGCTCAAAGGCAAACTCTCTTATTTTCTGCTACAATGCCGACCAAAATTCAAAACTTTGCTAGAAGTGCTTTGGTGAAACCTATTATTGTCAATGTGGGGCGGGCGGGAGCGGCAAATCTTGATGTGATTCAGGAGGTAGAGTATGTCAAACAAGAGGCAAAAATAGTTTACCTCCTTGAGTGCCTACAGAAAACACCACCTCCTGTTCTGATTTTTTGTGAGAACAAAGCTGATGTCGATGACATTCATGAGTATCTTCTCTTGAAAGGAGTGGAAGCTGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTTCATCATTTAAGGCTGGAAAGAAAGATGTCTTGGTTGCAACTGATGTTGCATCTAAAGGTTTGGATTTTCCTGATATTCAACATGTCATCAACTACGACATGCCAGCTGAAATAGAAAATTATGTCCATAGGATTGGACGTACTGGACGATGTGGTAAAACTGGTATAGCGACCACGTTTATAAACAAGAACCAAAGTGAGACAACTTTGCTTGATTTGAAACACCTATTGCAAGAAGCAAAACAAAGGATCCCACCGGTTTTAGGTGAGCTGAATGATCCAATGGAAGATACTGAAGAAATCACAGGCATAAGTGGTGTCAAGGGATGTGCGTATTGTGGCGGGCTTGGACATCGTATCCGTGATTGTCCTAAATTAGAACATCAGAAGAGTGTGGCAATTGCAAATAATAGAAAGGATTATTTTGGATCTGGAGGTTACAGAGGGGAAATTTGA 1764 0.4286 MEEDDYEEYIPVAKRRAMEAQKILQRKGKASAVIDDETEKVGVVETKPSLLVKASQLKKDQPEISVTEQIVQQEKEMIDNLSDKKTLMSVRELAKGITYTEPLPTGWKPPLHIRRMSKKDCEFIQKQWHIIVNGEDIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPLVPGEGPFGLIICPSRELARQTYEVIQQFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHLVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLGELNDPMEDTEEITGISGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKDYFGSGGYRGEI 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02626 587 Gene3D - 110 361 IPR027417 -
Vifa3g02626 587 Coils Coil 499 519 - -
Vifa3g02626 587 CDD SF2_C_DEAD 369 497 - -
Vifa3g02626 587 SMART ultradead3 161 372 IPR014001 -
Vifa3g02626 587 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 102 527 - -
Vifa3g02626 587 FunFam Probable ATP-dependent RNA helicase DDX41 109 358 - -
Vifa3g02626 587 Pfam DEAD/DEAH box helicase 166 345 IPR011545 GO:0003676|GO:0005524
Vifa3g02626 587 Pfam Helicase conserved C-terminal domain 381 488 IPR001650 -
Vifa3g02626 587 SUPERFAMILY Retrovirus zinc finger-like domains 545 566 IPR036875 GO:0003676|GO:0008270
Vifa3g02626 587 CDD DEADc_DDX41 153 358 IPR044113 GO:0000398|GO:0003724|GO:0005524
Vifa3g02626 587 ProSiteProfiles Zinc finger CCHC-type profile. 546 561 IPR001878 GO:0003676|GO:0008270
Vifa3g02626 587 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 357 IPR014001 -
Vifa3g02626 587 Pfam Zinc knuckle 545 561 IPR001878 GO:0003676|GO:0008270
Vifa3g02626 587 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 528 IPR001650 -
Vifa3g02626 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 503 IPR027417 -
Vifa3g02626 587 SMART helicmild6 407 488 IPR001650 -
Vifa3g02626 587 FunFam Probable ATP-dependent RNA helicase DDX41 367 529 - -
Vifa3g02626 587 Gene3D - 367 529 IPR027417 -
Vifa3g02626 587 SMART c2hcfinal6 545 561 IPR001878 GO:0003676|GO:0008270
Vifa3g02626 587 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02626 Vifa-Chr3 716201533 716203296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02626 114 523 Eukaryotic Initiation Factors Gene Family AT3G13920 29.056 6.56e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02626 K13116 - gmx:100814127 1110.13