Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02624 ATGGGGAGGAAAGGAAGCTGGTTTTCTTCTGTGAAGAAAATTTTCATATCTGATTCCAAGAAAGATCAGAAACCTCATCATCATAAGTCAAAGTTAACATGTTTTGGACATCATGAACATTATGTGGATCCAGAATCGGAATCAAGAGAAGTTGTTTCTGTTCCATCTCTTCCTAGAAGAAAAAAAGTTGTTAAACCAAAAAAAACCGAGGCAGAAGATGAACTCAACAAGCAAGCTTTATCCTTAGTTTTAGCCACGGCTGTTGCTACAGGCGCGGCCGTGGCTGCTGCTCAGGCCACTCGTCGCGCAACTCTTCCTTGTTGTTATATTGGAAAAACAGCTCAAGAAATATCAGCTATGAAAATTCAATCCGCCTTTCGCGGATATTTGGCGAGGAGGACTTTGCGCGGATTGAGAGGCTTGGCGAGGTTGAAAGCATTGGTGAAAGGACAATCTGTTCAACGACAGGCGGCTACTACATTACAATGCATGCAAACGCTTTCACGATTGCAGTCTAAAGTTAGTGCGAGGAAGGTTAGAATGTCGGAGGAGAATCAATCTTTCCAACGCCAATTGCAACAGAAACGCGAAAAGGAACTTGATAAGTTACAAGCCGCGCCTATTGAAGAATGGGATTATAGTTCGAAATCGAAGGAGCAAATCCAAGCGAAATTGTTGCATAGACAGATCGCGGCTATGAGAAGAGAAAAGGCCTTGGCCTATGCTTCAACACATCAACAAACATGGAGGAACACTTCAAGAGAATCCGCGGATGCGACGATTATGGATCCGAACAATCCTCATTGGGGATGGAATTGGCTTGACAGATGGATGGATTCAAGGCCATGGGAAGGACAAAACACAAAGGATGAAAAGAATCATAAATCAACAAAAGGTGCTGCGAGTCACACTATGTCAGTTGGAGAAATCTCTAAATTGTATACTCTAAGAGATCAAAATCAAGATAATAAAATCTCTCCTACAAGCCAAAAACCAAATCCTCAAAATATAGCTTCAAGGAACATACCTTCAACACCGATTAAAGTAAGAGCAAAAACATCATCAACTGGTTCTTGGGGTGGTGATGGTGATTCAAAGTCCATGTTCAACAAGATCTCCGAAAGCAAACGAAGACATAGCATCGCGGTATCTCCAGAGAAAGAAGATGAAAGCCTTGTTAACTCACCTGCAAAGGTTGTAAAGGCTAAAAGCAAAGTGCAAAGTACTCCTGCAAAGAAACAGCTTTCTTTCACAGCTTCTGGCTCTGGTGGTTCTGGTACAAGAAGGCATTCTGTTCCAAGTAAAATCGGAATGAATTCTAATAAGAATGGTGTTGCTACTATTCCTGAAGGGAAAGTGAAAGTGAGAAATGGAGGGAGCAGGTAG 1386 0.4206 MGRKGSWFSSVKKIFISDSKKDQKPHHHKSKLTCFGHHEHYVDPESESREVVSVPSLPRRKKVVKPKKTEAEDELNKQALSLVLATAVATGAAVAAAQATRRATLPCCYIGKTAQEISAMKIQSAFRGYLARRTLRGLRGLARLKALVKGQSVQRQAATTLQCMQTLSRLQSKVSARKVRMSEENQSFQRQLQQKREKELDKLQAAPIEEWDYSSKSKEQIQAKLLHRQIAAMRREKALAYASTHQQTWRNTSRESADATIMDPNNPHWGWNWLDRWMDSRPWEGQNTKDEKNHKSTKGAASHTMSVGEISKLYTLRDQNQDNKISPTSQKPNPQNIASRNIPSTPIKVRAKTSSTGSWGGDGDSKSMFNKISESKRRHSIAVSPEKEDESLVNSPAKVVKAKSKVQSTPAKKQLSFTASGSGGSGTRRHSVPSKIGMNSNKNGVATIPEGKVKVRNGGSR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02624 461 PANTHER IQ-DOMAIN 5-RELATED 1 439 - -
Vifa3g02624 461 MobiDBLite consensus disorder prediction 282 298 - -
Vifa3g02624 461 Pfam IQ calmodulin-binding motif 118 136 IPR000048 GO:0005515
Vifa3g02624 461 MobiDBLite consensus disorder prediction 322 461 - -
Vifa3g02624 461 MobiDBLite consensus disorder prediction 369 394 - -
Vifa3g02624 461 SMART iq_5 114 136 IPR000048 GO:0005515
Vifa3g02624 461 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Vifa3g02624 461 Coils Coil 178 198 - -
Vifa3g02624 461 MobiDBLite consensus disorder prediction 282 307 - -
Vifa3g02624 461 MobiDBLite consensus disorder prediction 407 446 - -
Vifa3g02624 461 MobiDBLite consensus disorder prediction 322 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02624 Vifa-Chr3 716130402 716132114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02624 1 436 IQD Protein Family AT5G03040 40.295 1.78e-88 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02624 - - gmx:100807725 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02624 3 716130402 716132114 Vifa3g02624 3 716130402 716132114 ECH