Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02618 ATGGGTTGTTTTTATTATTACATATTCTGTGTTGTTTTGTTTCTAAACATTGAAAACTATTTGGCTTCTTCAATTGAAGATCAAAAGAGAGATAAGATAAGTGGGTTACCAGGGCAACAAGGGAATGTTGGATTTGAGCAGTATTCAGGTTATGTGACTGTGAATGAACAGAATGGAAGAGCACTTTTTTACTGGTTGACTGAAGCTCCACTGAGCCGTGGACCAAATTCAAGGCCACTGGTTTTATGGCTTAATGGTGGTCCTGGTTGTTCTTCTATTGCTTATGGTGCTTCTGAGGAAATTGGCCCTTTTCATATTAAGTCTGATGGCAAATCACTTTACTTGAATCCTTATGCTTGGAACAATTTGGCAAATATACTGTTTCTTGATTCTCCAGCTGGCGTTGGTTTTTCTTATTGTAATAAAACAACAGATCTGTACACATTTGGTGACAAGAAAACAGCTGAGGATGCATATATTTTTCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGGGAAAGTTATGCAGGTCATTATGTTCCTCAATTGTCTCAAATTGTTTACCAGAGAAATAAAGGAATCAATAATCCAGTTATCAATTTTAAGGGCTTTATGGTTGGAAATGGTGTTACCGATGATTATCATGATTATGTTGGAACATTTGAGTACTGGTGGACACATGGTTTGATTTCCGATTCCACGTATAAAATTCTAAGAATTGCATGTGACTTTGGATCATCTCAGCATCCATCAGTGCAATGTAGGCAGACTCTTAGACTCGCACTTGCTGAGCAAGGAAACATTGATCCATATAGCATTTATACACCGCCTTGTAACAATACGGCGTCATATAAACGCAACTTGAACGGTCGTTACCCATGGATGTCAAGAGGGTATGATCCGTGTACTGAAAGGTATTCTGAGTTGTATTTCAATCGTCCAGATGTTCAGAAGGCACTTCATGCCAATGTAACAGGGATTCCATATACATGGAAAACATGCAGTGATATTGTTGGTAATTATTGGACTGATTCGCCATTGTCTATGCTTCCTATATATCACGAACTTATCAATGCTAGTCTACGAATATGGGTATTCAGTGGAGATACTGATTCTGTAGTTCCACTAAGCGCCACACGATATTCTATCGACGCATTGAAGCTTCCAACCATCGTCAGTTGGTATCCTTGGTATAACAGTGGCAAGGTTGGTGGATGGAGCCAAGTTTATAAAGGGCTCACATTTGTGACAGTAAGAGGCGCGGGACACGAGGTTCCTCTTCATAAGCCGCGCGAAGCGTTTATTCTTTTTAGATCATTCTTGGAGAACAAGTACATGCCATCACCAAGTTAA 1380 0.3913 MGCFYYYIFCVVLFLNIENYLASSIEDQKRDKISGLPGQQGNVGFEQYSGYVTVNEQNGRALFYWLTEAPLSRGPNSRPLVLWLNGGPGCSSIAYGASEEIGPFHIKSDGKSLYLNPYAWNNLANILFLDSPAGVGFSYCNKTTDLYTFGDKKTAEDAYIFLVNWFERFPQYKHRDFYIAGESYAGHYVPQLSQIVYQRNKGINNPVINFKGFMVGNGVTDDYHDYVGTFEYWWTHGLISDSTYKILRIACDFGSSQHPSVQCRQTLRLALAEQGNIDPYSIYTPPCNNTASYKRNLNGRYPWMSRGYDPCTERYSELYFNRPDVQKALHANVTGIPYTWKTCSDIVGNYWTDSPLSMLPIYHELINASLRIWVFSGDTDSVVPLSATRYSIDALKLPTIVSWYPWYNSGKVGGWSQVYKGLTFVTVRGAGHEVPLHKPREAFILFRSFLENKYMPSPS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02618 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Vifa3g02618 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 422 435 IPR001563 GO:0004185|GO:0006508
Vifa3g02618 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Vifa3g02618 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Vifa3g02618 459 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 439 IPR001563 GO:0004185|GO:0006508
Vifa3g02618 459 Gene3D - 358 451 - -
Vifa3g02618 459 Gene3D - 311 347 - -
Vifa3g02618 459 Pfam Serine carboxypeptidase 37 452 IPR001563 GO:0004185|GO:0006508
Vifa3g02618 459 FunFam Carboxypeptidase 27 289 - -
Vifa3g02618 459 Gene3D alpha/beta hydrolase 27 289 IPR029058 -
Vifa3g02618 459 FunFam Carboxypeptidase 307 455 - -
Vifa3g02618 459 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Vifa3g02618 459 FunFam Carboxypeptidase 358 452 - -
Vifa3g02618 459 ProSitePatterns Serine carboxypeptidases, histidine active site. 422 439 IPR033124 GO:0004185
Vifa3g02618 459 SUPERFAMILY alpha/beta-Hydrolases 29 456 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02618 Vifa-Chr3 714744334 714746508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02618 316 453 Calmodulin-binding Proteins AT2G22960 30.282 3.95e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02618 K16297 - gmx:100805722 823.157