Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02616 ATGCCTTTGTCAACTAATTTATGTAGTATTCATGAAAATGACAAGGAAGAGGATATTGATAGTCCTGGATCAGCAACTTCTAAATTTGTTGAGCCTCTGCCTTTGGTAAAAGCAGTTTCTTCACGTGATACTGGGGGATATGATAACTTATCAAGGGACATGGATACTGTTAAATCTACTACGATGAAATGCTTAGTCCGGTGTACTGCTAGGAAAGATCCTAGTGTTTCTGCTTGTAATGATGTCAATACACCTACAGATGTAAAGGAAACCTATGAGGATACTTATAATTCAATTATTGCTTCAAATAAAGAATCCGCCAACAGAGCGCATGGAGTATTTGCTAAGTTAGTGCCCAAAGACTGTAAAAAGCTTGTTAACATGGGAGTCAGCAATGATTCATCCCGTCATGCATTCATCATGGAAAAGTTTGCTGAGAAAAAGCGTCTTGAAAAAGTTAAGGAGAAAGTTACTGCACTCAAGTTCAAAGCCTTGCATCACTTGTGGAAAGAAGATATGCGCTTATTGTCTATTAAGAAATGCCGGCCAAAATCTCATAAGAAAAATGAACCAAGTAGTAGTAATCTGAAAAACCGATCTTCCATTCGTTCCCGGTTTCCTTTACCAGCTGGAAATCATCTAAGCTTGGTTCCAACATCAGAGCTTATTAATTTCACAAGCAAACTTCTTTCGGAAACTCAAACACAGATTCAGAGAAACACCCTGAAGATGCCAGCATTAATATTGGATGAGAAAGAGAAGATGGTTACACAATTCATATCTAGTAATGGGTTGATTGAAGATCCGCTTGCTATTGAGAAAGAAAGAGATATGATCAATCCTTGGACATCAGAAGAGAAAGAAATATTCTTAGAGAAATTTTCCGTGTTTGGAAAAGATTTCCGAAAAATTGCTTCTTTCCTTGATCACAAGACAACTGCGGACTGTGTAGAGTTCTACTACAAGAATCACAAATCTGAATGTTTTCAGAAATTGAATATGAAAGATGTTGGTAAGCTAGGGAAGTCATATGCAGCTAGAACTAACTTAATGGCATCAGGTAATAAAAGGATGCGAGCAGGAAGATTCCTTTTGGAAGGATTTGGTAATGTAAAAGCATCGAGGGGCGGGGACAGCATTATAGAGAGATCAAATAGTCTGGACACTCTTGGGGATGAAAGGGAGACTGCTGCTGCAGCTGATGTATTGGCCGGTATATGTGGGTCGCTTTCATCTGAGGCTATGAGCTCCTGCATAACAAGTTCAATTGATCCTGTAGATGACAATAAGGAAAGAAAATTCTTGAAAGTGAACCCTTTGCGAAAGCAAACCTTGATGCCTGATATTTCTCAGAATGCTGATGATGAGACATGTTCAGATGAGAGCTGTGGGGAAGTAGATCTTTCTGGGTGGACAGACGATGAGAAGGCAGCTTTTCTTCAGGCTTTATCATCTTTTGGATCCCCGCCAAATGATGATGCAAATGGTGGTCAGAGTGACACAGATGATGCATGTCTTGTTGAGGCAGGCTCAGTGGTTAATAAAACAGATGAGGACCTGCCTTCTGATGCCTTGAATACATTCCACGATGAATCCAATCCTCTGGAAGCTAGGGGCTTGTCAGCTGAATTAAATGAATCAAGAGAAATCACTGGGACGGTAGTACATCTTGAAAATGTAGATATGGTTTCTGATGTTTGTGCAATTAAGTTTGAATCTAAGCCGGGTTCTGATGAAAGCGGAGTTGGCTTGCACAAAACTGACAAGTCTTGTTCAGTCAATGACCATCCAGCAAAAAGTACATCAGATAGCATAGAAGTCTCCAAAGGCAAAGCAAATAAATTGGGAGATGCAGTTAGAGAATCAATTTCTACTGTAGGAATAATTAAACCACTGGAGTGTGGTTCTGTTGCTATGGATACAATGGTTTCAGAGGGTTCTTCTGGGGATCTCAGAAATGAAGTGGAAAGGCAAAGAGTGGCAGCACCCCCATGCTTTGAAGACAGAGATGTTAAACATGAAGCTGATGCAGGTGTTGTAGTTGAATCGAAAAGTTGTGTGTTAGAGTCAAGCACTACCTCAAATCTTTCATTCTCTCGTGTGACCAATTCATGCTCAGGATTGAGCTTTGGTTCTGAAAATAAGCATGTCTCCTTTGGAAAACCTCATGCTTCGGCATTATCTACAGACAATTCTCGGGCTACTACAAATTCATTGTTGCTGAACGCTGCTGCTGCTCCATGTGAAAAAGCAGTTAGCCAGGATAGATTGTCCTCTAATTGTGATATTCAAAGAGGTAGAGATATGCGGTGTCATAGTTCTGGCAGTGACCATCAGTTTCCTCTTCCATGCAATCATCTTGAGACTGTTAGCATCCTCCAGGGCTACCCCATGCAGGTGCCCGTCAAGAAGGAAGTGGATGGGGATGTGAATTGCAGCAGTTCAGTGTCTGAGTTTCCTTTTCCCCAAAAGGTCAAACAGACTGATGATCATTTCAAAACATTATGGCATTCTTCTGATTCAGAAAACACATCCAGAAATGGTAATGTGAAACTGTTTGGAAAGATTCTAACCAATTCTTCTTCCAATTTGATTACAAAGGGAAGTGAAGAAAATAGTACGAATCATACCAAGTCAAGTAACAAGTCTTGTAAACGTAAAATTACTAGCCATCAGAATTCTGATGGAAATTTGAAAATTTTGAAGTTTGACCGTGCTGATTATCCTGGCCTTGAAAATGTTCCAGTGAAGAGTTATGGTTTTTGGGAAGGGACTGGAATAATACAGACTGGTCTCCCATCATTGGCTGATTCTTCCTTCTTGTTAGCTAAATATCCTGCTGCCTTCAGCAATTATCCTACATCATCTTCCAGTTTGGAGCAACAACCATTGCAGCCGTTTGGCGCATCCACTTTTACTGCTAGAGACATCAATGGAAGCAATGCCATGCTTGACTATCAGATGCTTAGAAGTAGGGATGGTCCAAAAGTGCAGCCATTTATACTAGATGCCAAGCACAGCCAAGATGTATTCTCTGAGATGCATAGAAGAAACAGTTTTGAAGCAATATCTAGTTTGCAGCAGCATGGAATAGGAGTGATGGGAATGAATGGCATTGGAAGACCCGGGATTCTAGTGGGTGGGTCATGCAGTGGTGTCTCGGATCCTGTGGCAGCAATCAAAATGCATTATTCCAACTCTGAAAAATATGGTTGTCAGAAGGGGAGTATCTTGGGAGATGAATCTTGGGGAGGGAAAGGGGACATAGGCAGGTAG 3276 0.4087 MPLSTNLCSIHENDKEEDIDSPGSATSKFVEPLPLVKAVSSRDTGGYDNLSRDMDTVKSTTMKCLVRCTARKDPSVSACNDVNTPTDVKETYEDTYNSIIASNKESANRAHGVFAKLVPKDCKKLVNMGVSNDSSRHAFIMEKFAEKKRLEKVKEKVTALKFKALHHLWKEDMRLLSIKKCRPKSHKKNEPSSSNLKNRSSIRSRFPLPAGNHLSLVPTSELINFTSKLLSETQTQIQRNTLKMPALILDEKEKMVTQFISSNGLIEDPLAIEKERDMINPWTSEEKEIFLEKFSVFGKDFRKIASFLDHKTTADCVEFYYKNHKSECFQKLNMKDVGKLGKSYAARTNLMASGNKRMRAGRFLLEGFGNVKASRGGDSIIERSNSLDTLGDERETAAAADVLAGICGSLSSEAMSSCITSSIDPVDDNKERKFLKVNPLRKQTLMPDISQNADDETCSDESCGEVDLSGWTDDEKAAFLQALSSFGSPPNDDANGGQSDTDDACLVEAGSVVNKTDEDLPSDALNTFHDESNPLEARGLSAELNESREITGTVVHLENVDMVSDVCAIKFESKPGSDESGVGLHKTDKSCSVNDHPAKSTSDSIEVSKGKANKLGDAVRESISTVGIIKPLECGSVAMDTMVSEGSSGDLRNEVERQRVAAPPCFEDRDVKHEADAGVVVESKSCVLESSTTSNLSFSRVTNSCSGLSFGSENKHVSFGKPHASALSTDNSRATTNSLLLNAAAAPCEKAVSQDRLSSNCDIQRGRDMRCHSSGSDHQFPLPCNHLETVSILQGYPMQVPVKKEVDGDVNCSSSVSEFPFPQKVKQTDDHFKTLWHSSDSENTSRNGNVKLFGKILTNSSSNLITKGSEENSTNHTKSSNKSCKRKITSHQNSDGNLKILKFDRADYPGLENVPVKSYGFWEGTGIIQTGLPSLADSSFLLAKYPAAFSNYPTSSSSLEQQPLQPFGASTFTARDINGSNAMLDYQMLRSRDGPKVQPFILDAKHSQDVFSEMHRRNSFEAISSLQQHGIGVMGMNGIGRPGILVGGSCSGVSDPVAAIKMHYSNSEKYGCQKGSILGDESWGGKGDIGR 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02616 1091 Gene3D - 258 330 - -
Vifa3g02616 1091 SMART sant 278 326 IPR001005 -
Vifa3g02616 1091 MobiDBLite consensus disorder prediction 181 204 - -
Vifa3g02616 1091 MobiDBLite consensus disorder prediction 1 27 - -
Vifa3g02616 1091 MobiDBLite consensus disorder prediction 577 605 - -
Vifa3g02616 1091 Pfam Myb-like DNA-binding domain 281 322 IPR001005 -
Vifa3g02616 1091 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 6 359 - -
Vifa3g02616 1091 ProSiteProfiles SANT domain profile. 277 328 IPR017884 -
Vifa3g02616 1091 MobiDBLite consensus disorder prediction 865 879 - -
Vifa3g02616 1091 MobiDBLite consensus disorder prediction 865 890 - -
Vifa3g02616 1091 MobiDBLite consensus disorder prediction 579 593 - -
Vifa3g02616 1091 SUPERFAMILY Homeodomain-like 265 326 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02616 Vifa-Chr3 712928233 712933278 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa3g02616 Myb_DNA-binding 8.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02616 - - gsj:114403608 1349.73