Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02604 ATGGAGAATAATGGTCGAGTATGCACCATTTGTAATGGGAAGGCTTTGGGAGGCCACATAAAGTCTCACTATTCCAAATTACCAATCACTCCAAAACCTCCATTACACAATCTTAGAACTCTGAAAAGAAACTTCTATGGTAGAAAACCTGTGTTTGAGTTTTATCCAAAAAACCCAACTGGAAAAAGATCGAAACGCATTCGTAGACAATTCAACGTGGCTAGAGAAAAAGAAAAGACTACCAAATTTAGTGTGGCGGAAGAAAGAAAAGAGAATGCACAATTTAATGTGGCTCAAGAAAATGAAGAGAGTACGCGATTTCAATTAGTGTATCATAATGTCGATATGGAAGCTGCTAAAACACTCGTTATTATTTGTGAAAATGAATGGCAACAAATCGAGGAGAAATACTATCAAAACAAGGCAAAATTTTGTGAAAATGGCACCATTAAATTTAAGTGTGATATTTGTCATGAACTATTTCAATCTTATCAAGATATTGTTGGACATGATAAAAAGCATAATTGTAAATGCAGAAGTACATAA 546 0.3425 MENNGRVCTICNGKALGGHIKSHYSKLPITPKPPLHNLRTLKRNFYGRKPVFEFYPKNPTGKRSKRIRRQFNVAREKEKTTKFSVAEERKENAQFNVAQENEESTRFQLVYHNVDMEAAKTLVIICENEWQQIEEKYYQNKAKFCENGTIKFKCDICHELFQSYQDIVGHDKKHNCKCRST 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02604 181 Coils Coil 83 103 - -
Vifa3g02604 181 Pfam C2H2-type zinc finger 152 174 - -
Vifa3g02604 181 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02604 Vifa-Chr3 710056031 710056576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02604 8 181 C2H2 Transcription Factor Family AT1G02030 25.405 4.11e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02604 - - psat:127095871 264.233