Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02587 ATGATGGTTCTGTCAAGAGTTTTTTTTGCTAACTGGCCAATGTCAACATGTGGACTGAATGCAAAAGGTCAATTTGCCATTGTCTATAATGGAAGTATGTGTGTATATGATGGAATTCCTGCAGAAAAGGTGCAAGAAATAATGTTGATGGCTTCTGCCACTGCTAAGTCTTCTGAAATGAAAATTGGAATTCCATTCACTTCACTCTTTTCCAGTGCCGCTCCTTCTTCTCCACAAGGAACTTCTAACAATGTGCCTTCTCCTCCATCAGTCTGTTTTCCTGCTGCTGACAAGAGTTCCATTTGCAGGATGCAAGAATTTCCATTAGCACGCGGACAATCACTTCAAAGTTTTCTTGAGAAGAGAAGGATCAGGGTACGTGGCAAAGCACCTTATGCCTCTTCATCATCAAAAGCAGTTAACAACATTGAGAACAACTAA 441 0.4082 MMVLSRVFFANWPMSTCGLNAKGQFAIVYNGSMCVYDGIPAEKVQEIMLMASATAKSSEMKIGIPFTSLFSSAAPSSPQGTSNNVPSPPSVCFPAADKSSICRMQEFPLARGQSLQSFLEKRRIRVRGKAPYASSSSKAVNNIENN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02587 146 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 21 139 IPR040390 -
Vifa3g02587 146 ProSiteProfiles Tify domain profile. 18 53 IPR010399 -
Vifa3g02587 146 Pfam Jas motif 108 132 IPR018467 -
Vifa3g02587 146 SMART tify_2 18 53 IPR010399 -
Vifa3g02587 146 Pfam tify domain 22 52 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02587 Vifa-Chr3 699265370 699265810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02587 24 141 Tify Gene Family AT5G20900 40.833 4.21e-18 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa3g02587 tify 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02587 - K13464 gmx:100306655 132.88