Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02583 ATGATGCCCCCTGAGCAAGAAACAAGTATTAATGCACCAAATAACAACTCTCCAAACACAAATAGAACACAGAGTAGCTCCGTCCATGGCGAGCCGGAAGGTTCTTCTTCGAACAAAGTTAAACCTAGTTTGGATATCGATCACACCGCCATTAATATTACTTCTCATCCAACTACACCATCAACAACATTTTCTATTCTTCCTCAATCCCTGAGACCAATTACCCTCAAATTTGAAGATGTTTCATACAGCATAACCTTAACAAACCAAAACAAAAACGGTTGCGTTTTGGGAAAAAAATCAAAGGTAACAAGAAAAGTGCTAAATGGAGTCACCGGAATAGCGAGACCCGGCGAGTTAATGGCAATGTTAGGTCCCTCCGGTAGCGGCAAGACCACCCTACTAACCGCCCTCGCCGGAAGACTCACCGGGAAAGTCACCGGTACAATAACCTACAACGGGAACTCCGATTCAAGCTGCATGAAACGCAAGATAGGGTTTGTTACACAAGACGACGTCGTTTACCCTCATCTAACAGTGTTGGAAACGCTAACCTACACTGCTCTGTTGCGCCTCCCCAAAACTCTTACCCGGGAGGAGAAAGTAGAACACGCGGAGAGGATCATCACCGAGCTCGGCCTTACGCGGTGTCGAAACAGTCCTGTCGGTGGATGTATGGCGGTTTTCCGGGGAATCTCCGGCGGGGAGAGGAAACGGATGAGTATTGCGCAAGAGATGTTGGTGAACCCGAGTTTGTTGTTGTTGGATGAACCGACTTCCGGTTTGGACTCAACCACGGCTCAACTTATTGTTTCGGTTCTTAGAGGATTGGCCCGGTCCGGTCGGACCGTTGTGACTACTATTCATCAGCCTTCGAGCCGGTTGTATAGGATGTTTGATAAAGTGGTGGTTTTGTCTGATGGGTACCCGATTTATAGTGGTGAGTCGGGTCAGGTCATGGATTATCTTGGATCCGTTGGGTTTGTTCCGGGTTTCAACTTTGTTAATCCTGCTGATTTTCTACTTGACCTTGCTAATGGCATAGTTGCTGATGTGAAACATAATGATGAGATAGAACAACATGATCAAGATCAAGCTTTAGTAAAACAGTCACTAATTTCATCCTATAAGAAAAACTTATACCCTGCTCTTAAAGAAGATATTCAGAAAAATATCATTGAATCATCAGTTTTTGCATCAGGAGGAACATCTAGACGTTCTTCTGATAACCAATGGAACACTGGCTGGTGGGAACAATTCAGGATTCTGCTTAAGAGGGGTTTACAAGAGAGGAGACATGAATCTTTTTCTGGCTTAAAGATTTTCCAAGTATTGTCTGTTTCTATTCTCTCTGGACTTCTCTGGTGGCACTCTGATCCTTCACACATACAAGATCAGGTAGGACTTCTATTCTTCTTCTCGATCTTTTGGGGATTTTTCCCTCTCTTTAATGCAATCTTTGCATTTCCACTAGAGAAACCAATGCTAACAAAAGAAAGATCATCAGGCATGTACCATCTTTCTTCGTACTATGTTGCTAGGGTGGCAGGAGACTTGCCAATGGAGCTTGTTCTTCCAACAATTTTTGTAACTATCACCTATTGGATGGGTGGTCTTAAGTCTTCTCTTGTAACATTTGTGTTAACCCTTTTGATCATGCTTTTCAATGTTCTAGTCTCTCAAGGAATAGGCTTAGCACTTGGTGCAATTCTAATGGATGTTAAGCAAGCAACGACTCTAGCTTCAGTGACAATGTTGGTTTTTCTTTTAGCCGGTGGTTACTACATTCAAAAAATGCCTTCTTTTATAGCTTGGTTAAAGTACTTATCTTTTAGTCACTATTGTTATAAGTTGCTTGTAGGGGTGCAATATTCAGTAAATGAAGTGTATGAATGTAGACAAGGGTTACGTTGTAGGGTAAGAGATTTTCCGGCTATCAAGTGTTTGGAGCTTGATGATACTACTATGTGGGGAGATGTGGCTGCATTGACTGTAATGTTTGTTGGATTCAGGGTTATTGCATATTTAGCTTTAAGGATGGGGCATCCTAAACGCCAAAAGACTTAA 2067 0.4262 MMPPEQETSINAPNNNSPNTNRTQSSSVHGEPEGSSSNKVKPSLDIDHTAINITSHPTTPSTTFSILPQSLRPITLKFEDVSYSITLTNQNKNGCVLGKKSKVTRKVLNGVTGIARPGELMAMLGPSGSGKTTLLTALAGRLTGKVTGTITYNGNSDSSCMKRKIGFVTQDDVVYPHLTVLETLTYTALLRLPKTLTREEKVEHAERIITELGLTRCRNSPVGGCMAVFRGISGGERKRMSIAQEMLVNPSLLLLDEPTSGLDSTTAQLIVSVLRGLARSGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGESGQVMDYLGSVGFVPGFNFVNPADFLLDLANGIVADVKHNDEIEQHDQDQALVKQSLISSYKKNLYPALKEDIQKNIIESSVFASGGTSRRSSDNQWNTGWWEQFRILLKRGLQERRHESFSGLKIFQVLSVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLEKPMLTKERSSGMYHLSSYYVARVAGDLPMELVLPTIFVTITYWMGGLKSSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQKMPSFIAWLKYLSFSHYCYKLLVGVQYSVNEVYECRQGLRCRVRDFPAIKCLELDDTTMWGDVAALTVMFVGFRVIAYLALRMGHPKRQKT 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02583 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 326 IPR027417 -
Vifa3g02583 688 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 24 675 - -
Vifa3g02583 688 Pfam ABC transporter 109 260 IPR003439 GO:0005524
Vifa3g02583 688 FunFam ABC transporter G family member 22 95 326 - -
Vifa3g02583 688 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 76 332 IPR003439 GO:0005524
Vifa3g02583 688 MobiDBLite consensus disorder prediction 7 43 - -
Vifa3g02583 688 Pfam ABC-2 type transporter 418 624 IPR013525 GO:0016020|GO:0140359
Vifa3g02583 688 Gene3D - 90 325 IPR027417 -
Vifa3g02583 688 SMART AAA_5 117 310 IPR003593 GO:0016887
Vifa3g02583 688 ProSitePatterns ABC transporters family signature. 232 246 IPR017871 GO:0005524|GO:0016887
Vifa3g02583 688 MobiDBLite consensus disorder prediction 1 43 - -
Vifa3g02583 688 Pfam ABC-2 type transporter 289 354 IPR043926 GO:0140359
Vifa3g02583 688 CDD ABCG_EPDR 73 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02583 Vifa-Chr3 697650272 697653303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02583 106 308 Calmodulin-binding Proteins AT2G36910 30.047 8.85e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02583 K05681 - gmx:100783696 1068.53