Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02576 ATGAGTGAAGAATGTGTTGGAAACACTATTGCTACCTCTACTACACCATTAAACTGGTGGTATCTTCAAGCAACCAACTCTCTTTCTTCTAATTGGAATGATGTTAATAAACTTGCATGGAGCAATCAAATGAATAATCCAAATTCTTCATCTTCTTGTGATGATCAAGATATATCTGTTTCTTCGAATTCTTTCACCAATGCTTCCAACCATTCGTCTCTCACTGTTGAATCGTCTCGAAGAATACTTGAGTCGCATGCACCTACTTCTAATGACTTCATGGCTGAACATGATTCAGAGAACCAACTTTGGAGTCATGTTCTATCAGGTGTTGGATCAAATGGAGAGTTACAAAACACCCAAGAAATTGGAGAGAATTTCTTGGATGGACTTTCATCAAAAAGCATGTTTGATGAACCAGCTTGTGACTATTTGAAGAAACTTGATACAACAAGTTGGGAATATAGTGGTTCAACTTCATTCAACACAAGTTTTGAAAAGCACTTAGATGGGTACAGTGAAGCTCTTATTGAGAATAATGAAAGGTTGACAAAACTCTCCAATCTTGTTAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTTAGTAGCCACTTTGATCCACAAACAAACAACATATCTAATAATTTGAATTCCAATTCCTCCAATATGGATAATCATCACTATGAGTCTGACCCTAATTATCATCTCAAACAATTACCTTTTGGAGATTCTATTGGAGGAGTAGGTAATAAAATGTTCTCTAATATCCATGTTATTCAAGACATCAATAAGGTTAAGCAAGAATATCATCATCCTCATCATCATGGAAATCATGAAGTATTTGGAAAATCATTTGTAAATCCCAATGGATATCTTGATGGATTTAATAATAGTCTTAATTCAATTGGAGAAAATGGAAAATTTTATCAAGGGTTGCCAAATATTTCACCATGCACCAAAACTTTCTCAGATGTTATATCCTTTAATAGTAGGTTTGGAAGGCCAGTTATTGGAATCCATGCACAAAGACCTAGCATGAAATATTCAAACTTATCTGAGTCAAGAAAGCAAGGACTTCACACACCATCACATATGAGAACTGGTAGTGGAAGAGAAGGGACATCGCGCGAAGTAAAGAAGAAAAGATCTGAAGAATCATTAGAAGCAAACTTGAAGAAGCCAAAACAAGATTCATCAACAACTAATTCATCTTCTTCAAAGTTGCAAGCACCTAAAGTCAAGCTAGGAGAAAAGATCACAGCTCTTCAACAAATTGTGTCTCCTTTTGGAAAGACAGATACAGCATCTGTGCTGTTTGAAGCAATAGGGTACATAAAGTATCTTGAAGAACAAGTCCAGTTACTGAGCAACCCTTACTTGAAGGCAAATTCACACAAGGATCCAAGGGGAATGTACTTCGATAGAAAAGATAAGGAGGATGCGAAAATCGATCTTCGAAGCAGAGGTCTTTGTTTAGTTCCAACTTCATGTACACCTTTAGTTTATAGAGAGAACACTGGACCAGATTACTGGACACCAGCATATAGAGGATGTTTGTATAGGTAA 1569 0.3658 MSEECVGNTIATSTTPLNWWYLQATNSLSSNWNDVNKLAWSNQMNNPNSSSSCDDQDISVSSNSFTNASNHSSLTVESSRRILESHAPTSNDFMAEHDSENQLWSHVLSGVGSNGELQNTQEIGENFLDGLSSKSMFDEPACDYLKKLDTTSWEYSGSTSFNTSFEKHLDGYSEALIENNERLTKLSNLVSTWSIAPPDPEVSSHFDPQTNNISNNLNSNSSNMDNHHYESDPNYHLKQLPFGDSIGGVGNKMFSNIHVIQDINKVKQEYHHPHHHGNHEVFGKSFVNPNGYLDGFNNSLNSIGENGKFYQGLPNISPCTKTFSDVISFNSRFGRPVIGIHAQRPSMKYSNLSESRKQGLHTPSHMRTGSGREGTSREVKKKRSEESLEANLKKPKQDSSTTNSSSSKLQAPKVKLGEKITALQQIVSPFGKTDTASVLFEAIGYIKYLEEQVQLLSNPYLKANSHKDPRGMYFDRKDKEDAKIDLRSRGLCLVPTSCTPLVYRENTGPDYWTPAYRGCLYR 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02576 522 MobiDBLite consensus disorder prediction 348 370 - -
Vifa3g02576 522 MobiDBLite consensus disorder prediction 394 411 - -
Vifa3g02576 522 CDD bHLH_AtbHLH_like 415 457 IPR045239 -
Vifa3g02576 522 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 400 449 IPR011598 GO:0046983
Vifa3g02576 522 MobiDBLite consensus disorder prediction 371 393 - -
Vifa3g02576 522 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 415 464 IPR036638 GO:0046983
Vifa3g02576 522 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 103 500 - -
Vifa3g02576 522 MobiDBLite consensus disorder prediction 348 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02576 Vifa-Chr3 692864449 692867329 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02576 320 522 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 42.029 1.24e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02576 - - tpra:123920059 861.677