Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02575 ATGGCGGCTTCTTCATCGACATCATTCTTTGGAATCAGAGAAGAAAATCAAAGTCAGATAACACATCATCTTCATCCTCAATCCACAACTACTTCTGCTACTTCCTCAGCTCCTTCAACCATAGTTCCTCAAAAGAAAAGAAGAAATCAACCAGGAACACCAAATCCCGATGCAGAAGTGATAGCACTATCTCCCAAGACACTAATGGCAACAAATAGATTCATATGTGAGGTTTGCAATAAAGGGTTTCAAAGGGAGCAAAATCTTCAACTTCATAGAAGAGGACACAATCTTCCATGGAAGCTAAAGCAAAAGTCCAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCAACATGTGTTCATCATGACCCTTCAAGAGCTTTAGGAGACCTCACTGGGATTAAAAAGCATTACTCGCGTAAGCACGGCGAGAAGAAATGGAAATGCGAAAAATGCTCAAAGAAATATGCTGTTCAATCAGATTGGAAAGCACATTCAAAAACTTGTGGTACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTCATAACTCATAGGGCATTTTGTGATGCATTAGCACAAGAGAGTAACCAAACATCATCGACTAACAACAATATTTTGCGCCTCGGAACATCGGCGCCAAAGTTTGAGCAACACTTAATCTCATCACCGCCGTTAAATCACCAAACTTCATCATTTGGACAATACTCGGTTCCGTCTTCTTCATCGCCGTTCTTCAATATGAGTGATATTCCGAATCAATCCTTTGAAGAACACCAAGGACAATTCTCAAACAAGCCACAACAGCTACATGGTCTAATGCAACTTCCTGATCTTCAAGGAAACACAACAAGTAATAACTCGAACAATCTTTTCAACCTCATGAGTAATATCCACGATGATCAATTCAACAACAATCCTCTTATTAGTGATCATCATCAACAATCACTCTTTATGGTCAACTCAAACATGCCACAACAAGATCATCAAAACCAAAACCTGTCTAGTCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTTCTCAAATTGGTTCAACTAATTCAACCAATAACAACAAAGGTACTACTACTACTACTAATACCACATCTTTTGGAAATAGATGTAGTCCAAGTATGGAACTAAATGATCATAACAACAATGATGAACTTCATGGATTGATAAACTCTATTGCAAATGGAAATGGAAACACATCCTCCTTATTTGGTAATGAGAGTAACCTCAATATAAGGTTTGGTGAATCTGATAAGTTAACATTAGATTTTCTTGGTGTTGGTGGAATGGTCACAAACATGAGTGATGCTGGATTCTCCCAAAATCAACAACAACAACAACAACAGCATGCTATGGCTTCTTTGAATCATAACCTAAAATCAGCTCACTCAAGTCAACATTTTGGAAGCTCAAATTTGATGCAATGA 1470 0.3864 MAASSSTSFFGIREENQSQITHHLHPQSTTTSATSSAPSTIVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESNQTSSTNNNILRLGTSAPKFEQHLISSPPLNHQTSSFGQYSVPSSSSPFFNMSDIPNQSFEEHQGQFSNKPQQLHGLMQLPDLQGNTTSNNSNNLFNLMSNIHDDQFNNNPLISDHHQQSLFMVNSNMPQQDHQNQNLSSPHMSATALLQKASQIGSTNSTNNNKGTTTTTNTTSFGNRCSPSMELNDHNNNDELHGLINSIANGNGNTSSLFGNESNLNIRFGESDKLTLDFLGVGGMVTNMSDAGFSQNQQQQQQQHAMASLNHNLKSAHSSQHFGSSNLMQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02575 489 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Vifa3g02575 489 Gene3D Classic Zinc Finger 128 209 - -
Vifa3g02575 489 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Vifa3g02575 489 FunFam protein indeterminate-domain 5, chloroplastic-like 128 207 - -
Vifa3g02575 489 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Vifa3g02575 489 FunFam protein indeterminate-domain 12-like 53 121 - -
Vifa3g02575 489 MobiDBLite consensus disorder prediction 1 51 - -
Vifa3g02575 489 Pfam Zinc-finger double-stranded RNA-binding 74 96 IPR022755 -
Vifa3g02575 489 Gene3D Classic Zinc Finger 53 122 - -
Vifa3g02575 489 MobiDBLite consensus disorder prediction 360 383 - -
Vifa3g02575 489 SMART c2h2final6 74 96 IPR013087 -
Vifa3g02575 489 SMART c2h2final6 150 170 IPR013087 -
Vifa3g02575 489 SMART c2h2final6 115 145 IPR013087 -
Vifa3g02575 489 MobiDBLite consensus disorder prediction 1 57 - -
Vifa3g02575 489 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 464 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02575 Vifa-Chr3 691359254 691362499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02575 344 452 IDZ Gene Family AT2G02070 43.103 2.73e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g02575 zf-C2H2_jaz 2.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02575 K25870 - gmx:102663407 526.554