Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02551 ATGGGTGGGAGCGAGAACTCGAAGGCTATGGTTGTGGGTCGTTTGTCTGATTCCATCAGGGAGATTTCTGGGTTGCCCGAATGTCAAAACGTTTGCAAGAGGATGTATGGGAATTTGATCCGTAGGGTGAAGCTTCTGAGTCCTTTGTTTGAGGAATTGAAGGATTGTGATGAATCCCTTTATGATCAACAGCTTGAAGCTTTTGAAGCTTTAAGGGTTGCTTTGGATTTGGCTATGATTCTTCTCAAGTCTGTTAACCAAGGAAGTAAACTTTATCAGGCTTTATGGAGGAACGATGCAGCGGATAAGTTTCAACAAGTAACTGAAAAAATTGAAGCTGCATTGAGTGATATTTCATATGACAAACTTGAGATATCAGAGGAAGTTCAAGAACAGATTGAATTGGTGCATGCTCAGTTCAAAAGAGCGAAAGCTCAAACGGAATTCGCTGATTTACAGCTAGATTTGGATATGGCTGTAGCACTGAAAGAAAAAGACCCTGATCCTGCTATACTCAAAAGACTTTCTGAGAAGTTGCATCTTAGGACTATAAATGATTTAAAGAAAGAGTCTAGTGAATTGCACGAATTGGTCATAACAAGCGATGGAGAATTATCGGACAGTTTTGAAACAGTCTCGTCTCTTCTTAGGAAACTGAAGGACTGGGTGCTCACTGAAAATCCTGAGGTTGATAGTGCATATGAGAACGAGAAAATGTCAATTAAGCACCGGTCTCCTGTAATCCCAGATGATTTTCGATGTCCTATATCACTTGAACTAATGAAAGATCCTGTAATTGTCTCTACCGGTCAGACATATGAAAGATCCTGCATTCAAAAATGGCTCGATGCTGGTCACAGAACTTGCCCTAAAACACAGCAAACACTTCTGCATACAGCCCTTACTCCTAACTATGTTTTGAAGAGTCTGATTGGTTTATGGTGTGAAAGCAATGGTGTTGAGCTACCGAAGAAGCAAGGTAGCTGCAAAACAACGAAATCCGGAACTAGTCTTTCCGATTGTGACAGAATTGCTATCAAAGCTTTGTTGGATAAATTAACAAGTAACGATATTGAACAGCAAAGGGCGGCTGCTGGCGAGCTCCGATTGCTAGCCAAAAGGAATGCTGATAACCGAGTATGTATTGCCGAGGCAGGAGCAATACCGCTTCTCGTAGAGTTGTTGTCATCTGGTGACCCTCGAACTCAAGAGCACGCCGTTACAGCACTTCTCAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAATGCAGGAGCTATACCAGATATTGTTGATGTACTGAGAAACGGAAGCATGGAGGCTAGAGAAAATGCAGCCGCGACTCTCTTTAGTTTATCGGTTCTCGACGAGAACAAAGTTGCAATAGTTGCTGCACTGATACGGTTTATGAAGGACGCGGGGGGTGGGATGGTTGACGAAGCGTTAGCTATAATGGCAATCCTTGCAGGCCATCATGAAGGCAGGATGGCGATCGGTCAGGCTGAGCCAATCCCTATTTTAGTTGAGGTTATACGAACCGGATCACCGCGTAACCGGGAGAATGCGGCTGCAGTTTTGTGGTCGGTATGCACAGGAGATTTAGTGCAACTGAAACTAGCAAAGGAACATGGAGCAGAAGAAGCACTTCAAGGATTATCAGAAAATGGAACAGATAGAGCTAAGAGAAAAGCTGGAAGTATATTAGAACTGTTGCAAAGAATTGAAGGGGAGGATAGTTTGCAAAATTCCTAG 1758 0.4289 MGGSENSKAMVVGRLSDSIREISGLPECQNVCKRMYGNLIRRVKLLSPLFEELKDCDESLYDQQLEAFEALRVALDLAMILLKSVNQGSKLYQALWRNDAADKFQQVTEKIEAALSDISYDKLEISEEVQEQIELVHAQFKRAKAQTEFADLQLDLDMAVALKEKDPDPAILKRLSEKLHLRTINDLKKESSELHELVITSDGELSDSFETVSSLLRKLKDWVLTENPEVDSAYENEKMSIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLKSLIGLWCESNGVELPKKQGSCKTTKSGTSLSDCDRIAIKALLDKLTSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSGDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLRNGSMEARENAAATLFSLSVLDENKVAIVAALIRFMKDAGGGMVDEALAIMAILAGHHEGRMAIGQAEPIPILVEVIRTGSPRNRENAAAVLWSVCTGDLVQLKLAKEHGAEEALQGLSENGTDRAKRKAGSILELLQRIEGEDSLQNS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02551 585 Gene3D - 337 464 IPR011989 -
Vifa3g02551 585 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Vifa3g02551 585 CDD MLKL_NTD 28 141 - -
Vifa3g02551 585 FunFam RING-type E3 ubiquitin transferase 345 462 - -
Vifa3g02551 585 Gene3D - 465 583 IPR011989 -
Vifa3g02551 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 321 IPR013083 -
Vifa3g02551 585 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Vifa3g02551 585 CDD RING-Ubox_PUB 249 301 IPR045210 -
Vifa3g02551 585 ProSiteProfiles U-box domain profile. 247 321 IPR003613 GO:0004842|GO:0016567
Vifa3g02551 585 SMART Ubox_2 251 314 IPR003613 GO:0004842|GO:0016567
Vifa3g02551 585 SUPERFAMILY RING/U-box 247 323 - -
Vifa3g02551 585 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 467 IPR000225 GO:0005515
Vifa3g02551 585 Pfam U-box domain 248 318 IPR003613 GO:0004842|GO:0016567
Vifa3g02551 585 SMART arm_5 375 415 IPR000225 GO:0005515
Vifa3g02551 585 SMART arm_5 493 533 IPR000225 GO:0005515
Vifa3g02551 585 SMART arm_5 416 456 IPR000225 GO:0005515
Vifa3g02551 585 SUPERFAMILY ARM repeat 345 572 IPR016024 -
Vifa3g02551 585 PANTHER U BOX DOMAIN-CONTAINING 464 574 - -
Vifa3g02551 585 Coils Coil 126 146 - -
Vifa3g02551 585 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Vifa3g02551 585 Gene3D - 10 121 IPR036537 GO:0007166
Vifa3g02551 585 FunFam RING-type E3 ubiquitin transferase 248 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02551 Vifa-Chr3 686295413 686297923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02551 11 578 U-box Gene Family AT3G54850 60.163 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02551 - - gmx:100777452 951.814