Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02544 ATGGAGTGGGTTGTCGGCGGCAAGTTTAAGATCGGTCGCAAAATCGGAAGTGGTTCGTTTGGTGAAATTTTTATCGCTTCGGATATGGATAACTCTGAGATCGTAGCTGTTAAACTGGAAAAGAAGAATACAAGGCATCCACAACTATTGCAAGAGGCCAAATTATACAGTATTCTTCAAGGAGAAAGTGGTATTCCAAATATGAAATGGTGTGGCACTGATGGAGACCATAATGTTCTGGTTATAGATCTTCTCGGGCGTAGTCTGGAAGACCTTTTTGTATTCTGTGGGAACAAACTTTCTTTAAAAGCAGTTTTGATGTTAGCCGATCAGATGCTTTCGAGAATAGAATATGTGTATTCCAAGGGATTCTTACATAGAGACATCAAACCGGATAACTTCCTAATGGGTATTAGGAGAAAATCAAGTCAGGTTTATATTATTGATTTCGGACTAGCAAAAAGATATCAGGACCCAAAAAAAAGAAGCATATTGCTTACAGAGAGAAGAAAAATTTAA 519 0.3796 MEWVVGGKFKIGRKIGSGSFGEIFIASDMDNSEIVAVKLEKKNTRHPQLLQEAKLYSILQGESGIPNMKWCGTDGDHNVLVIDLLGRSLEDLFVFCGNKLSLKAVLMLADQMLSRIEYVYSKGFLHRDIKPDNFLMGIRRKSSQVYIIDFGLAKRYQDPKKRSILLTERRKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02544 172 Pfam Protein kinase domain 10 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02544 172 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Vifa3g02544 172 SMART serkin_6 9 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02544 172 PANTHER CASEIN KINASE-RELATED 9 162 - -
Vifa3g02544 172 ProSiteProfiles Protein kinase domain profile. 9 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02544 172 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vifa3g02544 172 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa3g02544 172 Gene3D Transferase(Phosphotransferase) domain 1 86 172 - -
Vifa3g02544 172 SUPERFAMILY Protein kinase-like (PK-like) 5 164 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02544 Vifa-Chr3 681064055 681066292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02544 5 153 EF-hand Containing Proteins AT1G74740 27.742 1.59e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vifa3g02544 Pkinase 1.5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02544 K08960 - gmx:100792736 276.559