Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02540 ATGAATAACTCAGTAGTATCAGACAACAGTTTTATCATTGAAAGTGAGGAAGAAGATGATAAGGATTTTAATGATGGAAATGATTCTGATTCTTCAAATTACTCGAATGAGAATCCGCCACAAAGGAAACCAAGTTCTTATAACCCTTCATGGCCTCAGAGTTACAGGCAATCAATTGATTTATACAGTAGTGTACCATCTCCGAATATTGGATTTCTGGGAACTTCTTCTTTTTCAAGATTGAGTAGTTCTTTTCTTTCTACATCTCTAACAAGGAGGCACACTCCGGAAGCACTTCCTTCGGTCACGAAGCCTCTGATACAACAACAGATAGAAGATGAGCCGCAACAAAGACGAAGCTCTCACGCGTTGCTTCCGCCTTCTGCTAGAAGGTCTTCTATGCTTAAGAAAGACTCTAAGGTTTCTCATGAAGTTCCTTCTGGCCATTGCTCATTCGGACAGGCTGTGCTTAATGGCATAAATGTTCTTTGTGGAGTAGGGATTCTTTCAACTCCTTATGCTGCTAAAGAAGGAGGATGGGCTGCTTTTGGTACTGCTGGACGTATCGCCATTTCAATAGTATTGTACGTCGAATTATATGGCTGTTGCATTGAGTATATAATTTTGGAAGGCGACAACTTGGCTTCGTTGTTTCCAAACGCATACTTAAATTTAGGTATAATTGAGTTGAATCCGAAAACACTCTTTGCTGTGATTGCCACTTTGGCTGTTCTTCCTACAGTTTGGCTCCGCGACCTTAGCATTCTTAGTTACATTTCAGCCGGTGGAGTTATTGCATCCGTTGTAGTAATTCTGTGCTTGTTTTGGGTTGGCGTTGAAGAAGTTGGCTTTCAACGCTCGGGGACAACGCTCAATCTTGCAACTCTACCTGTTGCTATTGGTCTTTATGGCTACTGTTATTCAGGACATGCTGTGTTCCCAAACATTTACACATCGATGGCGAATCCAAACCAATTCCCTGCAGTACTAGTAGCATGTTTCGGAGTTTGTAGCTTACTGTATGCTGGAGGTGCTGTTATGGGATACAGAATGTTTGGAGAAGATACACTCTCTCAATTCACTCTTAACCTGCCACAAGATTTAGTTGCAACCAAGATTGCAGTCTGGACTACGGTGGTTAATCCATTTACCAAATATCCTTTATACGCCACCATCATCGATACGTATGCATTGACTATATCTCCGGTGGCAATGAGTCTTGAAGAGTTGATACCATCGAACCATTCCAAGTCTTACCTGTTTTCCATTTTCATCAGAACAGGCCTTGTATTTTCTACCCTTGTTATTGGTCTCTCAGTTCCATTTTTCGGTTTGGTAATGTCGTTGATTGGATCTTTACTTACAATGCTTGTAACTTTGATTCTACCATGTGTTTGTTACCTAAGAATCTTGCGAGGCAAAGTCACGCGATTACAGTCAGGACTTTGCATTGCGATTATTATAGTAGGCGTTGTGTGTTCTTCCGTTGGAACGTACTCAGCGCTTTCGGAGATTGTTAAGAGTTTGAGTGGATGA 1536 0.4141 MNNSVVSDNSFIIESEEEDDKDFNDGNDSDSSNYSNENPPQRKPSSYNPSWPQSYRQSIDLYSSVPSPNIGFLGTSSFSRLSSSFLSTSLTRRHTPEALPSVTKPLIQQQIEDEPQQRRSSHALLPPSARRSSMLKKDSKVSHEVPSGHCSFGQAVLNGINVLCGVGILSTPYAAKEGGWAAFGTAGRIAISIVLYVELYGCCIEYIILEGDNLASLFPNAYLNLGIIELNPKTLFAVIATLAVLPTVWLRDLSILSYISAGGVIASVVVILCLFWVGVEEVGFQRSGTTLNLATLPVAIGLYGYCYSGHAVFPNIYTSMANPNQFPAVLVACFGVCSLLYAGGAVMGYRMFGEDTLSQFTLNLPQDLVATKIAVWTTVVNPFTKYPLYATIIDTYALTISPVAMSLEELIPSNHSKSYLFSIFIRTGLVFSTLVIGLSVPFFGLVMSLIGSLLTMLVTLILPCVCYLRILRGKVTRLQSGLCIAIIIVGVVCSSVGTYSALSEIVKSLSG 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02540 511 MobiDBLite consensus disorder prediction 1 52 - -
Vifa3g02540 511 MobiDBLite consensus disorder prediction 28 52 - -
Vifa3g02540 511 MobiDBLite consensus disorder prediction 110 138 - -
Vifa3g02540 511 Pfam Transmembrane amino acid transporter protein 182 500 IPR013057 -
Vifa3g02540 511 PANTHER OS05G0424000 PROTEIN-RELATED 181 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02540 Vifa-Chr3 680004395 680007137 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02540 3 444 Amino Acid or Auxin Permease AAAP Family AT2G39130 63.618 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02540 K15015 - gmx:100810530 779.63