LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g02539	ATGAATAACTCAGTAGTATCAGACAACAGTTTTATCATTGAAAGTGAGGAAGAAGATGATAAGGATTTTAATGATGGAAATGATTCTGATTCTTCAAATTACTCGAATGAGAATCCGCCACAAAGGAAACCAAGTTCTTATAACCCTTCATGGCCTCAGAGTTACAGGCAATCAATTGATTTATACAGTAGTGTACCATCTCCGAATATTGGATTTCTGGGAACTTCTTCTTTTTCAAGATTGAGTAGTTCTTTTCTTTCTACATCTCTAACAAGGAGGCACACTCCGGAAGCACTTCCTTCGGTCACGAAGCCTCTGATACAACAACAGATAGAAGATGAGCCGCAACAAAGACGAAGCTCTCACGCGTTGCTTCCGCCTTCTGCTAGAAGGTCTTCTATGCTTAAGAAAGACTCTAAGGTTTCTCATGAAGTTCCTTCTGGCCATTGCTCATTCGGACAGGCTGTGCTTAATGGCATAAATGTTCTTTGTGGAGTAGGGATTCTTTCAACTCCTTATGCTGCTAAAGAAGGAGGATGGGCTGCTTTTGGTACTGCTGGACGTATCGCCATTTCAATAGTATTGTACGTCGAATTATATGGCTGTTGCATTGAGTATATAATTTTGGAAGGCGACAACTTGGCTTCGTTGTTTCCAAACGCATACTTAAATTTAGGTATAATTGAGTTGAATCCGAAAACACTCTTTGCTGTGATTGCCACTTTGGCTGTTCTTCCTACAGTTTGGCTCCGCGACCTTAGCATTCTTAGTTACATTTCAGCCGGTGGAGTTATTGCATCCGTTGTAGTAATTCTGTGCTTGTTTTGGGTTGGCGTTGAAGAAGTTGGCTTTCAACGCTCGGGGACAACGCTCAATCTTGCAACTCTACCTGTTGCTATTGGTCTTTATGGCTACTGTTATTCAGGACATGCTGTGTTCCCAAACATTTACACATCGATGGCGAATCCAAACCAATTCCCTGCAGTACTAGTAGCATGTTTCGGAGTTTGTAGCTTACTGTATGCTGGAGGTGCTGTTATGGGATACAGAATGTTTGGAGAAGATACACTCTCTCAATTCACTCTTAACCTGCCACAAGATTTAGTTGCAACCAAGATTGCAGTCTGGACTACGGTGGTTAATCCATTTACCAAGTATGCATTGACTATATCTCCGGTGGCAATGAGTCTTGAAGAGTTGATACCATCGAACCATTCCAAGTCTTACCTGTTTTCCATTTTCATCAGAACAGGCCTTGTATTTTCTACCCTTGTTATTGGTCTCTCAGTTCCATTTTTCGGTTTGGTAATGTCGTTGATTGGATCTTTACTTACAATGCTTGTAACTTTGATTCTACCATGTGTTTGTTACCTAAGAATCTTGCGAGGCAAAGTCACGCGATTACAGTCAGGACTTTGCATTGCGATTATTATAGTAGGCGTTGTGTGTTCTTCCGTTGGAACGTACTCAGCGCTTTCGGAGATTGTTAAGAGTTTGAGTGGATGA	1506	0.4143	MNNSVVSDNSFIIESEEEDDKDFNDGNDSDSSNYSNENPPQRKPSSYNPSWPQSYRQSIDLYSSVPSPNIGFLGTSSFSRLSSSFLSTSLTRRHTPEALPSVTKPLIQQQIEDEPQQRRSSHALLPPSARRSSMLKKDSKVSHEVPSGHCSFGQAVLNGINVLCGVGILSTPYAAKEGGWAAFGTAGRIAISIVLYVELYGCCIEYIILEGDNLASLFPNAYLNLGIIELNPKTLFAVIATLAVLPTVWLRDLSILSYISAGGVIASVVVILCLFWVGVEEVGFQRSGTTLNLATLPVAIGLYGYCYSGHAVFPNIYTSMANPNQFPAVLVACFGVCSLLYAGGAVMGYRMFGEDTLSQFTLNLPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHSKSYLFSIFIRTGLVFSTLVIGLSVPFFGLVMSLIGSLLTMLVTLILPCVCYLRILRGKVTRLQSGLCIAIIIVGVVCSSVGTYSALSEIVKSLSG	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g02539	501	FunFam	Amino acid transporter AVT1A	179	498	-	-
	Vifa3g02539	501	MobiDBLite	consensus disorder prediction	28	52	-	-
	Vifa3g02539	501	MobiDBLite	consensus disorder prediction	1	52	-	-
	Vifa3g02539	501	MobiDBLite	consensus disorder prediction	110	138	-	-
	Vifa3g02539	501	PANTHER	OS05G0424000 PROTEIN-RELATED	181	479	-	-
	Vifa3g02539	501	Pfam	Transmembrane amino acid transporter protein	182	490	IPR013057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g02539	Vifa-Chr3	680004395	680007137	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g02539	3	434	Amino Acid or Auxin Permease AAAP Family	AT2G39130	64.938	0.0	612

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g02539	K15015		-	gmx:100810530	787.719