Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02533 ATGTGTAGTTGGAGATTGCTTCTATGTTTGATTTTCACATTGACTTTCTTGTTTGGGAAGAAGATGCATTGTCAAGAAATGAATGATTATGACCAACTTGATAACCCTGCTGTTCTTCCTCTTATTACTCAGCTTGTTTATAGCAGAATCTCAAATTTGACTTCAATTCTCAGTCACCAGATCACTGCAGACTCCAATTTCTGTGTCAAAGATCCGGATTCTGATTGGAATCAAGCCTTTAATTTTTCGTTGGATTTGGGCTTTTTGGCTTCTTGCATTAAAAAGACTAAAGGAGATATTACAAACCGCTTGTGTACAGCCGCAGAAGTGAAGTTTTACTTAAATAGTTTAATGGATAGATCTACAAGTGCCAATTATTTAAAGCCTAACAAGAACTGCAATTTGACCTCGTGGGTTCCTGGTTGTGAGCCCGGATGGGCATGTAGTGTTCCCCCAAGCCAGAAGATTGACCTTAGCGATTCAAAGGATGTGCCCACCAGAACTTCAAACTGTCGAGCATGTTGTGAAGGCTTCTTTTGTCCTCACGGTATCACATGCATGATACCATGCCCTCTAGGTTCCTATTGCCCCCTTGCTACACTTAATAAAACGACTGGCGTATGTGAACCATATCTTTATCAACTACCTCCGATGCAGCCAAATCATAGCTGTGGAGGAGCAAATATTTGGGCTGATTTTAGTAGCAGTAGCGAAACGTTTTGTTCAGAAGGATCCTTTTGTCCAACAACCACCACAAAATTTCCTTGCAGTAGTGGGCATTACTGCAGAACGGGTTCCACTTCGGAGAAAAGATGTTTCAAGCTAAGTTCATGCAATTCGAACACAGCAACCCAAAACATGCATGCGTATGGAGTTATGCTCATTGCAGCTTTGAGTACTTTGCTACTCATTATTTACAACTGTTCTGACCAAGTTCTCACTACTAGGGAAAGGAGAGTAGCAAAATCAAGAGAAGCAGCAGCTAGAAGTGCAAGGAAAACTGCAAATGCACACCATAGATGGAAACTTGCAAAGGACGCTGCTAAGAAAGGTGCATCTGGGCTGCAAGCTCAGTTATCACGGAAATTTTCTCGTAAGAAGGACGATGAAACTCTTGAAAAGGCTAAAATTTTAAGCCAAGAGACTTCTGAAACAGATGTTGAATTGTTTCCGCATTCACAACCTTCAAGCATGGTTGCAAGTTCGTCTTCCGTGCCAACTGAGAAAGGAAAATATCCAAGTGGGTTAATGGATATAGTACATGAATTTGAAAATGATCAGCATGTTAACCACAATCCCGATACAGGAAAAGAAACTAGATATAAAAGTGCTACAAAGGAAAAACAACCACATACTCATACACAAATTTTCAAGTATGCATATGCTCAACTTGAAAAAGAGAAGGCCCAGCAACAAGAAAATAAGAACCTTACCTTCTCAGGAGTACTAAAAATGGCTACAAATACTGAGAAAATTAAGAGACCTTTTATTGAGATTTCTTTCAGAGATCTGACTCTCACACTGAAATCTAGAAACAGACATATATTGAGAAATGTCACCGGGAAAATCAAACCTGGCCGTATCACCGCTGTCATGGGTCCGTCAGGGGCTGGCAAGACAACATTTCTTTCAGCTCTAGCTGGAAAGGCATTTGGATGCTTGGTTACTGGTTCAATTCTTATAAATGGAAGGCACGAATCAGTTCACTCGTTTAAGAAAATTATTGGCTTTGTTCCACAAGATGATGTAGTTCATGGAAACCTAACAGTGGAAGAAAATCTCTGGTTCAGTGCACAGTGCAGGCTATCAGCTGATTTGTCAAAACCAGAAAAAGTTCTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCTGTGCGGAATTCCGTAGTTGGAACTGTGGAAAAGCGAGGGATCTCTGGAGGACAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTTTGATGTTAGATGAGCCAACATCTGGTCTGGATAGTGCATCATCTCAGCTTCTTCTAAGAGCATTAAGACGTGAAGCTCTCGAGGGAGTCAACATTTGCATGGTGGTTCACCAACCTAGCTATGCTTTGTTCAAGATGTTTGATGACTTAATACTTCTGGGTAAAGGCGGTCTCATGGTCTATCATGGATCTGCCAAGAGAGTTGAAGAATACTTTTCAGGTCTCGGGATCCATGTCCCGGAGCGGATTAACCCTCCAGATTACTATATTGACATTTTGGAGGGCTTAGCGGCACCTGGTGAAACTTCAGGACTCAGTTATGAGGATCTGCCAGTTAAATGGATGCTTCATAATGGATATCCAATACCTCTTGATATGAGGCAGCATGCAGCTCAGTTTGATATGCCTCAGAGTGTAAATCCAGTTAATGATATAGACTCCAATGGCTCAGGTGATGTTGGAAAGACGTTTGCTGGAGAACTATGGAATGATGTGAGAAATAATGTGGAAGTGCGAGGAGAAAAAATAAAACTTAATTTTTCAAAATCCAAGGATTTATCTGACCGGAAAACTCCTGGTGTACTCAAGCAATATAAGTACTTTCTTATACGGGTTGGGAAGCAGCGATTACGAGAAGCTAGGATTCAAGCAGTAGATTATCTTATTTTATTACTCGCTGGAGCCTGCTTAGGATCAATTACCAAATCGAGCGAACAAACATTTGGAGCATCTGGTTACACCTATACGGTGATTGCTGTATCTCTTCTATGCAAAATAGCGGCATTGCGATCATTTTCTCTGGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTTCTCTCGAAAGACACAATGGATCATTTTAATACAGTGATCAAGCCTGTGGTCTACCTATCTATGTTCTATTTCTTAACCAATCCAAGATCTACTTTTGCAGCTAATTATATCGTGTTGCTTTGTCTTGTATACTGTGTCACCGGCATAGCATACGCATTGTCCATAGTTTTTGAACCTGGCGCAGCTCAGCTGTGGTCAGTACTTCTTCCAGTTGTTTTGACACTCATTGCGACACAACCAAAAGATAGTAAAATTTTGAAGGCTATAGCTAACTTATGTTACTCTAAGTGGGCTTTACAAGCATTGGTCATTGCAAATGCTGAAAGGTATCAAGGAGTGTGGCTCATAACTCGTTGCGGTTCGCTTTTAAAAAGTGGATATAATCTTCATGATTGGAGTCTCTGCTTATCCATGCTCATTCTTATGGGTGTAATTGGTCGCGCAATAGGGTTTTTCTGTATGGTCACCTTCAAAAAGAAGTAA 3321 0.4077 MCSWRLLLCLIFTLTFLFGKKMHCQEMNDYDQLDNPAVLPLITQLVYSRISNLTSILSHQITADSNFCVKDPDSDWNQAFNFSLDLGFLASCIKKTKGDITNRLCTAAEVKFYLNSLMDRSTSANYLKPNKNCNLTSWVPGCEPGWACSVPPSQKIDLSDSKDVPTRTSNCRACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGVCEPYLYQLPPMQPNHSCGGANIWADFSSSSETFCSEGSFCPTTTTKFPCSSGHYCRTGSTSEKRCFKLSSCNSNTATQNMHAYGVMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARKTANAHHRWKLAKDAAKKGASGLQAQLSRKFSRKKDDETLEKAKILSQETSETDVELFPHSQPSSMVASSSSVPTEKGKYPSGLMDIVHEFENDQHVNHNPDTGKETRYKSATKEKQPHTHTQIFKYAYAQLEKEKAQQQENKNLTFSGVLKMATNTEKIKRPFIEISFRDLTLTLKSRNRHILRNVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAFGCLVTGSILINGRHESVHSFKKIIGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSVVGTVEKRGISGGQRKRVNVGLEMVMEPSLLMLDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLGKGGLMVYHGSAKRVEEYFSGLGIHVPERINPPDYYIDILEGLAAPGETSGLSYEDLPVKWMLHNGYPIPLDMRQHAAQFDMPQSVNPVNDIDSNGSGDVGKTFAGELWNDVRNNVEVRGEKIKLNFSKSKDLSDRKTPGVLKQYKYFLIRVGKQRLREARIQAVDYLILLLAGACLGSITKSSEQTFGASGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTMDHFNTVIKPVVYLSMFYFLTNPRSTFAANYIVLLCLVYCVTGIAYALSIVFEPGAAQLWSVLLPVVLTLIATQPKDSKILKAIANLCYSKWALQALVIANAERYQGVWLITRCGSLLKSGYNLHDWSLCLSMLILMGVIGRAIGFFCMVTFKKK 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02533 1106 Gene3D - 497 734 IPR027417 -
Vifa3g02533 1106 Pfam ABC transporter 516 668 IPR003439 GO:0005524
Vifa3g02533 1106 ProSitePatterns ABC transporters family signature. 640 654 IPR017871 GO:0005524|GO:0016887
Vifa3g02533 1106 CDD ABCG_EPDR 497 723 - -
Vifa3g02533 1106 MobiDBLite consensus disorder prediction 383 409 - -
Vifa3g02533 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 721 IPR027417 -
Vifa3g02533 1106 SMART AAA_5 525 717 IPR003593 GO:0016887
Vifa3g02533 1106 FunFam ABC transporter G family member 24 493 735 - -
Vifa3g02533 1106 Pfam ABC-2 type transporter 697 1106 IPR043926 GO:0140359
Vifa3g02533 1106 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 499 741 IPR003439 GO:0005524
Vifa3g02533 1106 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 449 1093 - -
Vifa3g02533 1106 MobiDBLite consensus disorder prediction 383 410 - -
Vifa3g02533 1106 MobiDBLite consensus disorder prediction 324 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02533 Vifa-Chr3 679356901 679362163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02533 499 718 Calmodulin-binding Proteins AT2G36910 26.141 8.60e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02533 - - gmx:100775464 1816.2