Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02530 ATGTGCAAATCTAAGAAAAGCACCACCGTGGTGCAACCCACGAACAGAAACCCTAGACGAACCCCAACTTCTCCTTCAAATTTTCCATCTTCCAACAGTGAAGTTCCAATCACAGAATCAAGAAGTTACGTATACGGTGGAAAAGACAGAGAATGGTCCAAAACCTCTTCTTCTTCCGTTTCTAGCCACGCTTCTCTTGCAAGCCTCAAACACAATCTTCCAGAAAACCCTCACATCTACCCTTTATCTGAGATCTCAACCGCCACCGCTAACTTTACCGCAAACCGTCTCTCCTCCAACTCTTTCCGCTGCTCCCTACGTGATCGGGAGGTTGTCGTTTTCCAGCGGAAATTCCGCCGTCAGATAGACCTTCCGGAGCTTCGTGACCGTCTCGCGATTATCTGCCGGAGCCACCATAGTAGTCTGGTTAAACTCCTCGGAGCTTCTGTTTCTGGTAACTGCATTTACCTCGTTTATGAGTTTGTTCCTGGTGCTAACCTTTCTGATTGCCTTCGTAATCGCCGGAACCCTAGCTTCACTAGTCTCGCCACGTGGACCTCACGGATGCGAATCGCCTCCGATCTTGCTCACGGTCTTGATTATGTCCATAATTCCTCTGGTTCTGGTTCTGGTTTCGTCCACAACCACATCAAAACTTCTAGCATCCTTGTGTCCGAAGAGAATTTTGGCGCGAAGATTTGTCATTTCGGTACGTCGGAGCTCTGCGGCGAGGCCGTCGGTGAGTCATCTTTAACGGTTTCCGGCAGGATTTTGAAGAAGTCTGGTAGCCGTGGGGTGAGATTTGAAGGGACGAGGGGGTACATGGCGCCGGAGTTTATTTTAACAGGCGCGGCAACGCAGATGACAGACGTGTACGCGTTCGGTGTGGTGGTTCTGGAGCTTCTGAGCGGGGAGGAAGCGGTGAGGTTTGAATTGGAAGGTGATGCCGGCGGGTACAGGAGGGTAAGTGTGGTGGATACGGCGATGGAGGCCTGGAAGGAGCACGGCGGTGTGAGAAAGTGGGTTGATCGGAGGTTGAGGGATTCGTTTCCGATGGACGTGGCAGAGAAAATGACCCGGGTCGGGTTGGATTGTGTTGCGGATGATCCGAATGAGAGACCGGATATGGGACGGGTATCAATGGAAGTATCCAAGTTGTATTTGGAGTCGAAGGAGTGGGAGGAAAAATTAGGAACTAACATTGATTTTTCGGTCTCATTAGCCCCACGTTGA 1233 0.5077 MCKSKKSTTVVQPTNRNPRRTPTSPSNFPSSNSEVPITESRSYVYGGKDREWSKTSSSSVSSHASLASLKHNLPENPHIYPLSEISTATANFTANRLSSNSFRCSLRDREVVVFQRKFRRQIDLPELRDRLAIICRSHHSSLVKLLGASVSGNCIYLVYEFVPGANLSDCLRNRRNPSFTSLATWTSRMRIASDLAHGLDYVHNSSGSGSGFVHNHIKTSSILVSEENFGAKICHFGTSELCGEAVGESSLTVSGRILKKSGSRGVRFEGTRGYMAPEFILTGAATQMTDVYAFGVVVLELLSGEEAVRFELEGDAGGYRRVSVVDTAMEAWKEHGGVRKWVDRRLRDSFPMDVAEKMTRVGLDCVADDPNERPDMGRVSMEVSKLYLESKEWEEKLGTNIDFSVSLAPR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02530 410 Gene3D Transferase(Phosphotransferase) domain 1 163 404 - -
Vifa3g02530 410 ProSiteProfiles Protein kinase domain profile. 91 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02530 410 SUPERFAMILY Protein kinase-like (PK-like) 118 383 IPR011009 -
Vifa3g02530 410 Gene3D Phosphorylase Kinase; domain 1 52 161 - -
Vifa3g02530 410 PANTHER OS09G0572100 PROTEIN 1 410 - -
Vifa3g02530 410 MobiDBLite consensus disorder prediction 1 35 - -
Vifa3g02530 410 Pfam Protein tyrosine and serine/threonine kinase 121 380 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02530 Vifa-Chr3 678208484 678209716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02530 75 400 Receptor kinase-like Gene Family AT1G51940 33.432 6.12e-47 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa3g02530 PK_Tyr_Ser-Thr 8.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02530 - - mtr:11414164 666.766