Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02529 ATGGGTAATGTTGAAATCCCTAATTGGATTGAGGAGTTGCCACTGGCACCTGAATTTCGACCTACTGATACTGAATTCTCTGACCCTATTGCTTATATTTCAAAGATTGAGAAAGAAGCTAGTAACTTTGGGATTTGCAAGATTATCCCACCCTTGCCCAAACCTTCAAAAAAATATGTTTTTTCGAATTTGAACAAGTCCCTCTTGAAGCGTCCTGAGTTGGGTCCAGATAACAGTTCTTTAGGGGTTGGTAATTCTTGGAAATCGGGTTCTTGGGATAGTAGTACTGATGGGATATCGCGGGCCGTGTTTACTACAAGGCAGCAAGAAGTGGGGCATAATGTGAAAAAAATCAAAGGGACAGATCAGAAGCCAATGTCATGTGTTCATAAGCAAGTATGGCAAAGTGGAGAGGTTTATACATTGGAACAGTTTGAGTCTAAATCAAAGTCTTTTGCAAGAAGCGTTCTTGGTATGTCGAAGGATGTTTCTCCACTGGTTATAGAGGCTATGTTTTGGAAGGCGGCTTCAGAGAAGCCGATATATGTGGAGTATGCCAATGACGTGCCTGGGTCTGCTTTTGGAGAATCACAGGGTCAGTTTTATCGAAGTCATAGAAGGCAACGAAAAAGGACTTATTATAAGAGTAGAGTAGATAGCTCTGTTTGTAAACAAACAGAAATGGGTGATGTAAAAGACACACAAAATGACCGGTCTAACGCTGCTGCTACTCCAATTCATGCTGACTCGTGTTTAGAGATGTCTAAATCAGCTATGAATATGTCAACATCTACAGAAAATGAGGCATCAGAGTCTTCTAAAGAGAGGACTTCAGATGCCAACAATGATATGCAAGGCACTTCTGGTTGGAAGCTTTCAAATAGTCCTTGGAATTTGCAAGTTATTGCCCGCGCTTCAGGCTCACTAACGCGTTTCATGCCGGATGATATTCCTGGTGTCACTTCACCCATGATATACATTGGTATGTTGTTTAGTTGGTTTGCCTGGCATGTAGAGGATCATGAGCTTCACAGTTTGAATTATCTTCACACTGGCTCATCAAAGACTTGGTATTCTGTTCCTGGAAATTATGCTTTTGCTTTTGAGGAAGTCATCCGCACTGAGGGTTATGGTGGTGATATTGATCAATTTGCTGCTTTGAAACTATTGGGCGAGAAAACAACTCTTTTAACACCTGAGGTAGTTGTTGGATCTGGGATTCCTTGTTGCAGGTTAGTACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGGACTCCACAGTGGCTTGGTGTAGCTAAAGAAGCTGCTGTGCGTAGAGCTACAATGAATCATCTTCCCATGCTCTCCCATCAGCAACTGCTTTACTTGCTTACCATGTCTTTTATTTCAAGTGTGCCAAGAACACTGTTACCTGGTGTGCGCAGTTCTCGTTTGAGAGACCGTCAGAAAGAAGGAAGAGAGATTCTAGTAAAGCAGGCTTTTATAGAAGATATGCTGCAGGAAAACAAACTGCTATCCATTCTTCTTGGAAAAGAAGCTACTAAACAAGTTGTTTTATGGAATGCTGATTTACTACCAGATTCTGGCAAATATCGTCAGCTGCCGGATTTAGCTTCTACTTCTGGAACCTATATGACAGACATGTCAAATGATAATATTAGTTCTGCAGATAAGAGTAGCCATTCTCTTCTTGATGATATGAGTTTGTACATGGAGAATCTGACCGATTTATATGATGGTTGTGATGATAGTCTTCCTTGTCACTTCCAAACTGACTCAGGAGCACTGGCTTGTGTGGGCTGTGGAATACTCGGTTTTCCATTTATGACATTGATACAGCCAACTGAAAAATCGATAATGGAACTTCTTCCTGATAATCATCATCTAGTTGAAGATTCTATCCTGAACTCTGTTGCCTCCTTTCACAGTGGAGTCTCAAGGGATCTTCCTGTTTCTGAACTTGCTTTGGCAGAGGATTCACAGAATCAGTCACTGATCAAGTGCAATAAATATTGGAACACTTCCAGTAAATTTATGAAGCCACGGATTTTCTGCTTGGAGCATGCTGTTCAGATAGTAGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAACTTGTCATTCAGACTATCCGAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGAGATAAAAAGTGATTTTGATTATAATGAGGTTCCAATAGATATTGCTTCCCCAGAAAATTTGGCTCTGATAGATCTGGCAATTGATGGTGAAGAACTTGATGAATGTGAAGACTGGACATCTAAACTAGGCCTTAACCTGCGGTTCTGTGTCAACAGTATAAACAAATCTCCATGTGAACAAGTTCCTTTGACACTAGCATTAGGGATGCAGCTCTATCATAAACATCCTGGTTTATCTATAAATTGGCATTCACAGAAAACTCGGTCTAAAAGGTCAAATCATTTAGCTCAGTCTCAACCTGACAACATTCAGATAAAGAAAGACGATCCTTTGCAAATAGAAGGCTCCATTGCTAAAAAGAAGCTAATTCAGTATTCAAGAAAGAGGTTCAAGTCAAACCAAAACTGTTTCTCTGCGGCAAGCACGGTTCGTGAATCCCATGAAAAGTTCAAAAATGCATCAGCTGTTATGAGTGGGGATCATTATAAATGTGTTTCTAAAGAAGAGCTTGACACAGACAATTTCAGCTGTGATTGTGCTTTGTCACATGCTGCTGCAATATCTCCAATGCATCATGAAATCCAGAATGCCGAAGCTCCCACTAGTACGAGCTTGAATACCAGTGTCTCAGAAATATGTGGCAAAGAGAGCGAGGACTGTCAGGACAAGAAATATTCTCGCCCTCTTACAAGTGGAATAGATGGAAATATTGATGTGTTGGGAAACAACCAAATTACAGAAGCATTTGTCATTGATAGCAATTGTAATGGCATAGACTTGGACGGTGAAGGGTATCCAGAATATCAGTCTGCATGCAAAAGCAACAATGAAGCTGTTTTATTGTCTTCATTTAAAAACCAACCTGCTCTTGCCACTGTGGATGGAAGTTTTGAAAGTCCAAATAATACTTACTCTGAAGAAAGAGTAAACAATTCTCTGTCGATAGAAGTGACAACTGAGGGAGAAAGTAAGTCTTTGAATGAAATGGACAAGGAACCTCTAAATGATGATAAAACAATAAGCGAACATACTCCTATTGCAGATGTTTGTGAAGTTCCAAGAGAGGTTTATGCTTCTGCAGACTTCCATGATACAGTAAGCTTGGATGGTGAAATGCAGCATGAAGGACAGGCTGGAAAAAGTGGTAAAAAAGAAATAATTCAGTCCACTAATATTTCAGTAAAACAGATATGTGAATCTACAAGTGGGGAATATGTCGAGGGGTTGCAAGGTGAAGCGGTTTTAGAGTCTGCAAAGCAGTCTGTGATCCAAAATAAGAGTAGAACTAATGAGGAACCCGTTTCTAGTGCATCTGTATCAGAAATAGGATGTTCTGAAGTTTCAGTAGAAACCTATCCTGAAGAAGACTCGTGTATTCAATTTGTTCTGAGTACAGAAACAGAAATGGAAATCCAACCCATTAATAAAACTGATGAGGAACTTTCTGTATCAACTCAGGAATGTTCTCAGACCGAGAAAAAGACTTGTGGTGGAGAAAACATAAATGGAGGTGAAGTTGATTTGTCACAAGATAATGGGGAGCTGGAAAGCTGTGACTTGACTACAGAAGCTCCCAGATCAAATCCCTCAAAGAAAAAAAAGAGGAAAATGGAAGACCCTGCACAGAGCCAAATTGATTGCTATGATTTTATAAGAAGTCCATGTGAGAGGTTGAGGCCAAGAACTGGAAAGATTGCCACCACAAGCAAAAGTGGAGGGGCCATCAGCCAAAATGACGACGAAAATCCGGTAGCTAAAAGGACACGGAAACCTCCCGAAGCTTCAGTTCCTTGGAAGGATAAAAAAGTCAATGTCAAAAGACCGCACAAGTGCGACCTTGATAATTGCCGTATGCGTTTCACGACTAAGGCTGAGTTACAGATGCACAAACGTAACCTTTGCCCACATGAAGGGTGTGGTAAGAAATTCAGTTCCCACAAATACGCGTTAATTCACCAGCGCATTCATGAGGATGATAGGCCACTGAAATGTCCATGGGAAGGCTGTTCCATGTCATTCAAGTGGGCATGGGCAAGAACCGAGCACCTAAGGGTGCATACCGGGGAGAAGCCTTATCAATGTAAAGTGGAGGGTTGCGGCCTTTCTTTCAGATTCATATCAGATTTTAGCAGGCACAGGCGAAAAACAGGACACTATGTGAAATCTCCCGCTTGA 4410 0.4113 MGNVEIPNWIEELPLAPEFRPTDTEFSDPIAYISKIEKEASNFGICKIIPPLPKPSKKYVFSNLNKSLLKRPELGPDNSSLGVGNSWKSGSWDSSTDGISRAVFTTRQQEVGHNVKKIKGTDQKPMSCVHKQVWQSGEVYTLEQFESKSKSFARSVLGMSKDVSPLVIEAMFWKAASEKPIYVEYANDVPGSAFGESQGQFYRSHRRQRKRTYYKSRVDSSVCKQTEMGDVKDTQNDRSNAAATPIHADSCLEMSKSAMNMSTSTENEASESSKERTSDANNDMQGTSGWKLSNSPWNLQVIARASGSLTRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNYLHTGSSKTWYSVPGNYAFAFEEVIRTEGYGGDIDQFAALKLLGEKTTLLTPEVVVGSGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLGVAKEAAVRRATMNHLPMLSHQQLLYLLTMSFISSVPRTLLPGVRSSRLRDRQKEGREILVKQAFIEDMLQENKLLSILLGKEATKQVVLWNADLLPDSGKYRQLPDLASTSGTYMTDMSNDNISSADKSSHSLLDDMSLYMENLTDLYDGCDDSLPCHFQTDSGALACVGCGILGFPFMTLIQPTEKSIMELLPDNHHLVEDSILNSVASFHSGVSRDLPVSELALAEDSQNQSLIKCNKYWNTSSKFMKPRIFCLEHAVQIVEMLQSKGGANVLITCHSDYPKIKAHARAVAEEIKSDFDYNEVPIDIASPENLALIDLAIDGEELDECEDWTSKLGLNLRFCVNSINKSPCEQVPLTLALGMQLYHKHPGLSINWHSQKTRSKRSNHLAQSQPDNIQIKKDDPLQIEGSIAKKKLIQYSRKRFKSNQNCFSAASTVRESHEKFKNASAVMSGDHYKCVSKEELDTDNFSCDCALSHAAAISPMHHEIQNAEAPTSTSLNTSVSEICGKESEDCQDKKYSRPLTSGIDGNIDVLGNNQITEAFVIDSNCNGIDLDGEGYPEYQSACKSNNEAVLLSSFKNQPALATVDGSFESPNNTYSEERVNNSLSIEVTTEGESKSLNEMDKEPLNDDKTISEHTPIADVCEVPREVYASADFHDTVSLDGEMQHEGQAGKSGKKEIIQSTNISVKQICESTSGEYVEGLQGEAVLESAKQSVIQNKSRTNEEPVSSASVSEIGCSEVSVETYPEEDSCIQFVLSTETEMEIQPINKTDEELSVSTQECSQTEKKTCGGENINGGEVDLSQDNGELESCDLTTEAPRSNPSKKKKRKMEDPAQSQIDCYDFIRSPCERLRPRTGKIATTSKSGGAISQNDDENPVAKRTRKPPEASVPWKDKKVNVKRPHKCDLDNCRMRFTTKAELQMHKRNLCPHEGCGKKFSSHKYALIHQRIHEDDRPLKCPWEGCSMSFKWAWARTEHLRVHTGEKPYQCKVEGCGLSFRFISDFSRHRRKTGHYVKSPA 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02529 1469 MobiDBLite consensus disorder prediction 258 284 - -
Vifa3g02529 1469 SUPERFAMILY Clavaminate synthase-like 292 456 - -
Vifa3g02529 1469 SMART c2h2final6 1437 1463 IPR013087 -
Vifa3g02529 1469 SMART c2h2final6 1377 1401 IPR013087 -
Vifa3g02529 1469 SMART c2h2final6 1354 1376 IPR013087 -
Vifa3g02529 1469 SMART c2h2final6 1407 1431 IPR013087 -
Vifa3g02529 1469 Gene3D Classic Zinc Finger 1404 1432 - -
Vifa3g02529 1469 MobiDBLite consensus disorder prediction 1271 1285 - -
Vifa3g02529 1469 MobiDBLite consensus disorder prediction 1327 1341 - -
Vifa3g02529 1469 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1403 - -
Vifa3g02529 1469 ProSitePatterns Zinc finger C2H2 type domain signature. 1409 1431 IPR013087 -
Vifa3g02529 1469 MobiDBLite consensus disorder prediction 1310 1341 - -
Vifa3g02529 1469 ProSiteProfiles Zinc finger C2H2 type domain profile. 1437 1468 IPR013087 -
Vifa3g02529 1469 MobiDBLite consensus disorder prediction 1237 1285 - -
Vifa3g02529 1469 FunFam Probable lysine-specific demethylase ELF6 1404 1433 - -
Vifa3g02529 1469 SMART JmjN_1 15 55 IPR003349 -
Vifa3g02529 1469 ProSiteProfiles Zinc finger C2H2 type domain profile. 1407 1436 IPR013087 -
Vifa3g02529 1469 ProSiteProfiles Zinc finger C2H2 type domain profile. 1377 1406 IPR013087 -
Vifa3g02529 1469 SUPERFAMILY beta-beta-alpha zinc fingers 1378 1414 IPR036236 -
Vifa3g02529 1469 Pfam JmjC domain, hydroxylase 325 443 IPR003347 -
Vifa3g02529 1469 Pfam jmjN domain 17 50 IPR003349 -
Vifa3g02529 1469 MobiDBLite consensus disorder prediction 1068 1084 - -
Vifa3g02529 1469 Gene3D Classic Zinc Finger 1378 1403 - -
Vifa3g02529 1469 SUPERFAMILY beta-beta-alpha zinc fingers 1417 1460 IPR036236 -
Vifa3g02529 1469 ProSitePatterns Zinc finger C2H2 type domain signature. 1439 1463 IPR013087 -
Vifa3g02529 1469 Gene3D Classic Zinc Finger 1433 1463 - -
Vifa3g02529 1469 ProSitePatterns Zinc finger C2H2 type domain signature. 1379 1401 IPR013087 -
Vifa3g02529 1469 MobiDBLite consensus disorder prediction 1064 1084 - -
Vifa3g02529 1469 Gene3D Cupin 9 464 - -
Vifa3g02529 1469 SMART cupin_9 291 460 IPR003347 -
Vifa3g02529 1469 ProSiteProfiles JmjC domain profile. 291 460 IPR003347 -
Vifa3g02529 1469 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02529 Vifa-Chr3 678198695 678207799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02529 1 874 C2H2 Transcription Factor Family AT5G04240 54.190 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g02529 JmjC 5.2e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02529 - - gmx:100819845 2003.41