Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02524 ATGGAGTTTTCAAATGGAGATCATACCAATGGTTTTTCATTGAATCTTTGCATTGGTGAAACTAACCGTGACCCTTTGAATTGGGGTATGGCTGCGGATTCAATGAGAGGCAGTCATCTTGATGAGGTGAAGCGTATGGTTGAAGAGTATCGGAAACCGGTCGTGCCATTAAGTGGAAAGGGATTAACAATTTCTCAAGTGGCTGCAATCGCTACCCACAATACCGGTGTGACGGTTGAACTTGCCAAAGAGACACGCACTTCCGTTAAAGCTAGTAGTGATTGGGTGGTTGATAGTATGAATAAAGGGACCGATAGCTATGGAGTGACCACTGGGTTTGGTGCAACTTCTCACCGGAGAACAAAACAAGGTGGTGCTCTCCAAAATGAACTCATAAGATTTCTGAATGCTGGGATTTTCGGCAATGGAACAGAAACAATTCAAACATTACCTCACACAGCTACAAGAGCTGGCATGTTGGTTAGAATCAACACACTGCTTCAAGGATATTCAGGAATAAGATTTGAAATCATGGAGGCAATAGCAAAATTTCTGAACCATAACATAACACCATGTCTTCCATTAAGAGGCACAATCACTGCATCAGGTGACTTGGTTCCTTTATCGTATGTCGCTGGGCTTTTAATCGGAAGACCGAACTCGAAATCCATTGGACCCGACGGAAAAATTCTCAACGCTAAAGAGGCTTTTCAACTAGCTGGAATCGAAACTGGTTTTTTCGAGTTGCAACCTAAAGAAGGTTTGGCACTGGTGAATGGTACTGCTGTTGGATCAGGTTTGGCTTCATTGGTTCTTTTTGAGACAAATTTACTTGTTGTTTTGTCGGAACTTTTGTCGGCGATTTTCGCTGAGGTTATGCAAGGAAAGCCTGAATTCAGTGACCATTTGACTCATAAGCTGAAACACCATCCTGGTCAGATTGAGGCTGCTGCTATAATGGAACATATTTTAGATGGAAGTTATTATGTTAAGGCTGCACAAAAAGTTCATGAAATTGATCCACTTCAGAAGCCTAAACAAGACAGGAACAAGGCACTTCATGGAGGGAATTTCCAAGGTACACCGATTGGCGTTTCCATGGATAACACGCGTTTAGCCATTGCTTCGATTGGAAAACTCATGTTTGCGCAATTCTCTGAGCTTGTGAATGATTTTTATAACAACGGATTGCCTTCGAACCTCACCGCGAGCCGTGATCCGAGCTTGGATTACGGCTTCAAAGGAGCGGAAATTGCAATGGCATCATATTGCTCAGAACTTCAGTACCTTGCTAATCCTGTCACTACTCATGTTCAAAGTGCTGAGCAGCATAACCAAGATGTTAACTCCTTAGGCTTGATTTCATCAAGAAAAACCACAGAAGCCGTAGAAATACTGAAACTCATGTCATCGACTTACTTAGTCGCATTGTGCCAAGCAATTGATCTTAGGCACATTGAAGAAAACTTGAAAACTGTAGTCAAGAACACAGTGAGTCAAGTGGCAAAGAGAATTCTCACAGTTGGTGTAAATGGCGAGTTGCATCCATCAAGGTTCTGCGAGAAGGATTTGCTAAATGTCGTTGAACGCGAGTATGTGTTCGCGTACATTGATGACCCCTGCAGTGCTACATACCCTCTAACGCAGAAGCTGAGACATGTACTAGTTGATCATGCATTGCAAAATGGCGATAAGGAGGCGAATTCAGCAACCTCGATTTTCCAAAAGATTGGAGCTTTTGAGGAAGAGCTTAAGACCCTTTTATCTAAAGAGGTTGAAAATGCAAGAACTGAAGTTGAAAATGGAAACCCTGCAGTTCCTAACAGGATTAAGGAATGTAGGTCTTATCCATTGTACAAGTTTCTGAGACAAGATTTGGGGACAAGTTTGCTGACAGGTGAGAAAATTAAGTCACCTGGTGAAGAATGTGATAAGGTTTTCTCAGCATTGTGTGATGGAAGTTTTATTGATCCTATGTTGGATTGTCTTAAGGAATGGAATGGTGCTCCTCTACCTATATGCTAG 2025 0.4222 MEFSNGDHTNGFSLNLCIGETNRDPLNWGMAADSMRGSHLDEVKRMVEEYRKPVVPLSGKGLTISQVAAIATHNTGVTVELAKETRTSVKASSDWVVDSMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTETIQTLPHTATRAGMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPDGKILNAKEAFQLAGIETGFFELQPKEGLALVNGTAVGSGLASLVLFETNLLVVLSELLSAIFAEVMQGKPEFSDHLTHKLKHHPGQIEAAAIMEHILDGSYYVKAAQKVHEIDPLQKPKQDRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRDPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTTEAVEILKLMSSTYLVALCQAIDLRHIEENLKTVVKNTVSQVAKRILTVGVNGELHPSRFCEKDLLNVVEREYVFAYIDDPCSATYPLTQKLRHVLVDHALQNGDKEANSATSIFQKIGAFEEELKTLLSKEVENARTEVENGNPAVPNRIKECRSYPLYKFLRQDLGTSLLTGEKIKSPGEECDKVFSALCDGSFIDPMLDCLKEWNGAPLPIC 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02524 674 CDD PAL-HAL 60 484 IPR001106 -
Vifa3g02524 674 FunFam Phenylalanine ammonia-lyase 487 608 - -
Vifa3g02524 674 SUPERFAMILY L-aspartase-like 24 674 IPR008948 GO:0003824
Vifa3g02524 674 Gene3D Fumarase/aspartase (Central domain) 350 669 - -
Vifa3g02524 674 Gene3D - 17 261 IPR024083 -
Vifa3g02524 674 FunFam Phenylalanine ammonia-lyase 16 261 - -
Vifa3g02524 674 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
Vifa3g02524 674 Pfam Aromatic amino acid lyase 345 495 IPR001106 -
Vifa3g02524 674 Pfam Aromatic amino acid lyase 62 339 IPR001106 -
Vifa3g02524 674 Gene3D - 487 608 IPR023144 -
Vifa3g02524 674 PANTHER HISTIDINE AMMONIA-LYASE 349 674 IPR001106 -
Vifa3g02524 674 Gene3D Fumarase/aspartase (Central domain) 262 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02524 Vifa-Chr3 677183943 677189309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02524 24 674 Monolignol Biosynthesis Gene Families AT3G53260 75.434 0.0 1100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02524 K10775 - gmx:100801470 1160.98