Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02514 ATGGGTTTCTTTGCTACTTTCTTCGGTTTTCTTGGTTTCGCTATCGGAATTCCTCTTGGTCTTCTTGTTGGATTCTTTCTCTTTGTTTATTCTGAAGCCAAGCAAGTCAAGAATCCTGTTGTCAGACCGATTAGTGAATTAGGTCCAATTGCTGTGCAAGAGCTTTTACCTGAGATTCCTCTTTGGGTTAAGACACCTGATTATGAACGAGTTGATTGGTTGAACAGATTTTTATTGGATATGTGGCCTTTCTTAGAGAAGGCAATTTGTGGGATGATTAGAACTACAGTAGAACCAATATTTGCTGAATACATTGGAAAGTATCAGATCAACGGAATTGAGTTTGATCAACTGAGCCTTGGTACTCTTCCTCCTATTGTATGCGGTATGAAAGTTTTGGAAACAAATGAAAAGGAATTGGTCATGGAACAAGTTATCAAATGGGCTGGCAACCCAAACATAGTGTTGACCTTGCACGTGTTGTCTTTGAAAATCAAAGTTCAGTTGGTAGACTTACAAATGTTTGCAACGCTGCGGATAACTTTAAGACCTTTGGTGCCGACACTTCCATGTTTTGCAAAGATTGTGGTGTCTTTGATGGAGAAGCCTCACGTGGATTTTGGGATGGCGATATCAGGAGGGGACATAATGTCAATACCTGGTCTTTATAGATTTGTTCAGGAAACAATAAAAAAGCAAGTTGCAAGCCTCTATCTTTGGCCTCAAACTCTGGAAATTCCTATTCTTGATGAATCAACGGTGGCAATACAGAAGCCTGTGGGAATTTTACATGTGAATGTGGTTAGAGCAATCAAGCTTTTGAAAATGGATTTGTTGGGAGCTTCTGATCCATATGTCAAACTGAGTCTGACTGGCGACAAACTGCCCTCGAAGAAAACTACTATCAAGAGAAAGAATTTGAATCCACAGTGGAACGAGAAGTTCAAGATTGTTGTGAAGGACCCTCAATCTCAAGTTCTCCAATTACAAGTTTATGATTGGGACAAGGTTGGTGCACATGACAAGCTGGGAATGCAGTTAGTCCCGCTAAAGCTGCTTAAGCCGTACGAGAATAAAGAATTTATGCTTGATTTGCTTAAGGACACAAATATCAACGAAACTCCGAATAAGAAGTTCAGAGGACAAATTGTGGTGGACTTGACTTTTGTGCCATTCAAAGAAGATAGTATGAAATTTGGTGGATCTTCGGAAGGATATGTTAGAAAGGATAGTGGAATCGATAGTATATCTGATGATGAGGTCCAAGAAGGAGCAGGTTTGCTTTCCGTTGTGATACAAGGAGCCGATGAAGTTGAGGGAGACCATCACAGTAATCCATATGCTATACTCACCTTTAGAGGCGAAAAGAAAAGAACAAAGATGATGAAGAAAACGCGTCAACCACGTTGGAATGAAGAATTCCAGTTCATGCTAGAAGAGGCTCCTCTACATGAGAAGATACACATTGAAGTGATGAGCAAGAGGAAGAGCTTCAGTTTTCTGTCAAAGGAATCATTGGGGCATGTGGAGATAAACCTGAATGATGTGGTGCATAATGGTAGGATTAATGATAAATATCATCTAATAAACTCAAGGAATGGAGTAATACATGTTGAGATCAAATGGAAGGTGGCTTAA 1638 0.3993 MGFFATFFGFLGFAIGIPLGLLVGFFLFVYSEAKQVKNPVVRPISELGPIAVQELLPEIPLWVKTPDYERVDWLNRFLLDMWPFLEKAICGMIRTTVEPIFAEYIGKYQINGIEFDQLSLGTLPPIVCGMKVLETNEKELVMEQVIKWAGNPNIVLTLHVLSLKIKVQLVDLQMFATLRITLRPLVPTLPCFAKIVVSLMEKPHVDFGMAISGGDIMSIPGLYRFVQETIKKQVASLYLWPQTLEIPILDESTVAIQKPVGILHVNVVRAIKLLKMDLLGASDPYVKLSLTGDKLPSKKTTIKRKNLNPQWNEKFKIVVKDPQSQVLQLQVYDWDKVGAHDKLGMQLVPLKLLKPYENKEFMLDLLKDTNINETPNKKFRGQIVVDLTFVPFKEDSMKFGGSSEGYVRKDSGIDSISDDEVQEGAGLLSVVIQGADEVEGDHHSNPYAILTFRGEKKRTKMMKKTRQPRWNEEFQFMLEEAPLHEKIHIEVMSKRKSFSFLSKESLGHVEINLNDVVHNGRINDKYHLINSRNGVIHVEIKWKVA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02514 545 SMART C2_3c 262 362 IPR000008 -
Vifa3g02514 545 SMART C2_3c 427 525 IPR000008 -
Vifa3g02514 545 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Vifa3g02514 545 FunFam Synaptotagmin-2 isoform A 256 412 - -
Vifa3g02514 545 CDD SMP_SYT 60 248 - -
Vifa3g02514 545 ProSiteProfiles C2 domain profile. 240 363 IPR000008 -
Vifa3g02514 545 PRINTS C2 domain signature 278 290 IPR000008 -
Vifa3g02514 545 PRINTS C2 domain signature 305 318 IPR000008 -
Vifa3g02514 545 PRINTS C2 domain signature 327 335 IPR000008 -
Vifa3g02514 545 Pfam C2 domain 261 356 IPR000008 -
Vifa3g02514 545 Pfam C2 domain 428 527 IPR000008 -
Vifa3g02514 545 Gene3D C2 domain 427 545 IPR035892 -
Vifa3g02514 545 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 426 542 IPR035892 -
Vifa3g02514 545 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Vifa3g02514 545 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 393 IPR035892 -
Vifa3g02514 545 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 9 542 IPR045050 GO:0008289
Vifa3g02514 545 FunFam Extended synaptotagmin-2 427 544 - -
Vifa3g02514 545 Gene3D C2 domain 256 404 IPR035892 -
Vifa3g02514 545 ProSiteProfiles C2 domain profile. 408 526 IPR000008 -
Vifa3g02514 545 CDD C2 263 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02514 Vifa-Chr3 674867450 674871136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02514 260 344 C2H2 Transcription Factor Family AT4G05330 38.824 5.12e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02514 - - gmx:100813029 936.791