Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02512 ATGGGAAGTAAATGGAAGAAAGCAAAGGTGGCTCTTGGTCTTAATCTCTGCATGTTTGTTCCAAGAACATTAGACGATGACTTTCCTCCTTCTACGGTGGTTTCTGAGAGGCTGTCGGATGCTGCTCTTCTCTCTTCCCGGCCAACTACTCCGGTGCCGTCTTTTCATGGTTTGAGACTTTCCAAAAGTAGCAGCAAATCGTCCAAGCAAACTTGTGCAATATGCTTAACCAAAATGAAGCAGGGATCTGGTCAAGCTATATTCACAGCAGAATGTTCACATTCTTTCCATTTTCACTGCATTGCTTCAAATGTGAAACATGGGAATCAAATATGTCCTGTGTGCCGAGCAAAGTGGAAGGAAATACCCTTGTCGGGTTCTAGTTTGGAACCTATCCAAGGTAGAGTAACACCAAGTCCAATAAATTGGCCTCAAAATGATGCTTTGATGGCTGTGGTCCATCGGCTGCCTCTACCTTTACCTCATCCTCGCCGAGATTTGAATAGGCGGCATATTGTGCCAGTTTATCAGGCTTCTGAGCCGGGCGTATTTGACGATGATGAATCTTTAAATCACCAACATGCAATTTCTGAGAGAAGTATTTGCAGTAAGAGTATTGAAGATACTGATGCTGTTCGAGCTATGGAGATTAAAACATACCCTGAAGTGTCTTCCACTCCAAGGTCTAACACTTGTTCTAACTTCACAGTTTTGGTTCATCTCAAAGCTACTGCTGCAGCCGCTGCTTCTACCAAAAGACAAAACCTTAGCAGAAATCAGGCTACCTTGACGCAGATTTCGCAGACTCCACGTACCCCAGTTGACTTGGTCACCGTGCTTGACGTCAGTGGTAGCATGGCGGGAACTAAGCTCGCTCTGCTAAAAAGGGCCATGGGATTTGTTATACAGAACCTAGGCTCTAATGACCGGCTTTCTGTTATTGCTTTCTCTTCCACGGCTCGCCGTCTCTTTCCATTATGTAAGATGACTGATTCTGGGCGGCAACAGGCATTGCAAGCTGTTAATTCTTTGGTTGCAAATGGTGGTACCAATATTGCGGAAGGACTGAGAAAAGGTGCCAAGATAATGGAAGACCGAAAAGAAAAGAATCCAGTTGCGAATATTATTCTGTTGTCGGATGGACAAGATAATTACACTGTCAGTGGCTCGGGAAATGACCAACCTCAACCAAACTACCATTTGCTTCTGCCGACTTCCATCAGTGGTCGAAACAATTCAGGATTTCAATTTCCCGTGCATGCTTTTGGATTTGGTGCAGACCATGATGCCTCATCAATGCATTCAATTTCTGAGATCTCTGGCGGAACATTTTCATTCATCGAAACTGAAGCTGTGTTACAGGATGCATTTGCACAATGCATTGGAGGACTCCTTAGCGTCGTTATTCAAGAGTTGCAAGTGGTGATTGAGTGTGTACACCCTGATCTCGGTCTTGTTTCGCTTAAAGCAGGAAGTTACCCTAGCCGTTCAATGGCTGATGGACGCAAAGGATTTATTGATGTTGGGGACTTGTATGCTGATGAAGAGAGGGATTTTTTAGTTTCAGTTAACATTCCAGCTACGTCGAGCAGTGAAACATCGTTGATAAAGGTCAAATGTGTTTACAAGGATCCCTTGACTCAGGAGACAGCAGCATTGGAAAGTGATGAAGTAAAGATTGAGAGGCCCGATGTAGCCGCCGGGCAGGTTGTAATGTCTCTTGAAGTGGACAGACAACGCAACAGGCTCCAAGCAGCCGAGGCAATGGCACAGGCACGGACCGCAGCTGAACGGGGAGACCTCACTGAAGCAGTATCGATCCTTGAAAACTGTCGGAAGATTCTTTCAGAGACCGTATCAGCTAAATCTCATGACCGTCTTTGTGTTGCATTGGATGCTGAACTCAAGGAAATGCAAGAGCGGATGGCGAGTAGGCATGTGTACGAAGCATCTGGGAGAGCATATATACTCTCCGGTTTGAGTTCACACTCGTGGCAAAGAGCAACTGCAAGAGGCGATTCAACTGACAGTTCAAGCCTTGTTCAAGCTTATCAGACACCATCAATGGTTGAGATGCTTACTCGATCTCAGGCCATGTTACTAGGTAGTTCATCGGGTCAGAGGCTTCTCCAGCCACTGTTGTCATACAGATCACAACCAAGCCCAAGGTAA 2172 0.4563 MGSKWKKAKVALGLNLCMFVPRTLDDDFPPSTVVSERLSDAALLSSRPTTPVPSFHGLRLSKSSSKSSKQTCAICLTKMKQGSGQAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLSGSSLEPIQGRVTPSPINWPQNDALMAVVHRLPLPLPHPRRDLNRRHIVPVYQASEPGVFDDDESLNHQHAISERSICSKSIEDTDAVRAMEIKTYPEVSSTPRSNTCSNFTVLVHLKATAAAAASTKRQNLSRNQATLTQISQTPRTPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLCKMTDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVANIILLSDGQDNYTVSGSGNDQPQPNYHLLLPTSISGRNNSGFQFPVHAFGFGADHDASSMHSISEISGGTFSFIETEAVLQDAFAQCIGGLLSVVIQELQVVIECVHPDLGLVSLKAGSYPSRSMADGRKGFIDVGDLYADEERDFLVSVNIPATSSSETSLIKVKCVYKDPLTQETAALESDEVKIERPDVAAGQVVMSLEVDRQRNRLQAAEAMAQARTAAERGDLTEAVSILENCRKILSETVSAKSHDRLCVALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDSSSLVQAYQTPSMVEMLTRSQAMLLGSSSGQRLLQPLLSYRSQPSPR 723
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02512 723 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 70 697 - -
Vifa3g02512 723 Pfam RING-like zinc finger 72 101 IPR001841 -
Vifa3g02512 723 Pfam von Willebrand factor type A domain 275 458 IPR002035 -
Vifa3g02512 723 ProSiteProfiles VWFA domain profile. 275 461 IPR002035 -
Vifa3g02512 723 Pfam VWA / Hh protein intein-like 625 697 IPR032838 -
Vifa3g02512 723 Coils Coil 621 641 - -
Vifa3g02512 723 CDD vWA_C3HC4_type 274 448 - -
Vifa3g02512 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 123 IPR013083 -
Vifa3g02512 723 CDD RING-H2_WAVH2 70 121 - -
Vifa3g02512 723 SMART ring_2 72 115 IPR001841 -
Vifa3g02512 723 ProSiteProfiles Zinc finger RING-type profile. 72 116 IPR001841 -
Vifa3g02512 723 Gene3D von Willebrand factor, type A domain 275 462 IPR036465 -
Vifa3g02512 723 SUPERFAMILY vWA-like 270 461 IPR036465 -
Vifa3g02512 723 SUPERFAMILY RING/U-box 68 122 - -
Vifa3g02512 723 SMART VWA_4 273 460 IPR002035 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa3g02512 Vifa-Chr3 674055495 674058536 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02512 24 116 C3H Transcription Factor Family AT1G57730 33.673 3.89e-07 48.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02512 - - gmx:100818239 1196.8