Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02501 ATGGTTGGACCAAACTTCATGGACGAGATAGACTGTGGAAGCTTCTTTGACAACATCGACAACCTGCTTGATTTCCCCGTCGATGATGTTGATGCCACCGCCGCCGCTTCGTTGTCGACCGTCACCTCCGCCGCCAACTGTAACTCGCTTGCGAGTATTTGGCCGAATGAGTCTGACTCGTTTCCTGGTTCTGACTCGGTGTTTTCCGGGAATAGTCCTTCTGACCTCTCAGTGGAGCTCTCTGTTCCGTATGAAGACATTCTTCCATTGGAATGGCTGTCAACTTTTGTGGAGGACTCATTTTCAGAGGGGAGTCTCACAATGAAGAAAGTGGAGCAACCCCCATCATCATGTGTGACCACTAAGGAGGATTCTGTGCATAACCAATTCCAGACATCAAGTCCAGTTTCTGTCCTTGAAAGCAGCAGTTCCTGCTCTGGCGGAAAGCCGACGATGACAGCAGGGATTTACATTCCCGTGCCTTGTGGGCGTGCACGCACCAAGCGTCCACGTCCTGCAACCTTCAACCCTCGGTCCGCCATGCAGCTCATTTCCCCTACTTCCTCTTTTGTTGCGGAGAATGTGCAGCCTAATGTTATCTCTACCAAGGCTGCTGCTTCTTCAAATTTTGACAATTTTGCCGAGTCTCAAGTTGTGGCTAAGAAACCAAAGCTCCCTCCTGGAGAATCTAAGAAGAAAAAGAAGATCAAGATGCCACTTCCTGCTGCTCCGGCTGACAGCGGTGAACAGAATGGTTCACTGCCTGTTAGGAAATGCATGCATTGTGAAATAACCAAGACACCACAATGGAGGGCAGGTCCATTGGGGCCGAAAACACTCTGCAATGCCTGTGGCGTTCGCTACAAGTCAGGCCGGCTTTTCCCTGAGTACCGTCCTGCTGCTAGTCCAACTTTTTGTCCTTCATTGCACTCCAATTCTCACAAGAAAGTCCTTGAAATGAGAACCAAGGATATTGATAGCTCTGGTTTTGAATCACATTCAGCTGCCTCTCCTGAACTCATTCCAAACACTAACAGCATTCTCGCCCTGGAATACATTTGA 1062 0.4925 MVGPNFMDEIDCGSFFDNIDNLLDFPVDDVDATAAASLSTVTSAANCNSLASIWPNESDSFPGSDSVFSGNSPSDLSVELSVPYEDILPLEWLSTFVEDSFSEGSLTMKKVEQPPSSCVTTKEDSVHNQFQTSSPVSVLESSSSCSGGKPTMTAGIYIPVPCGRARTKRPRPATFNPRSAMQLISPTSSFVAENVQPNVISTKAAASSNFDNFAESQVVAKKPKLPPGESKKKKKIKMPLPAAPADSGEQNGSLPVRKCMHCEITKTPQWRAGPLGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRTKDIDSSGFESHSAASPELIPNTNSILALEYI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02501 353 ProSitePatterns GATA-type zinc finger domain. 259 284 IPR000679 GO:0006355|GO:0043565
Vifa3g02501 353 FunFam GATA transcription factor 248 336 - -
Vifa3g02501 353 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 257 316 - -
Vifa3g02501 353 PANTHER GATA TRANSCRIPTION FACTOR 14 336 - -
Vifa3g02501 353 SMART GATA_3 253 303 IPR000679 GO:0006355|GO:0043565
Vifa3g02501 353 Pfam GATA zinc finger 259 292 IPR000679 GO:0006355|GO:0043565
Vifa3g02501 353 MobiDBLite consensus disorder prediction 219 252 - -
Vifa3g02501 353 PIRSF Txn_fac_GATA_plant 3 346 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vifa3g02501 353 ProSiteProfiles GATA-type zinc finger domain profile. 253 289 IPR000679 GO:0006355|GO:0043565
Vifa3g02501 353 Gene3D - 256 303 IPR013088 GO:0006355|GO:0008270
Vifa3g02501 353 CDD ZnF_GATA 258 305 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02501 Vifa-Chr3 669479906 669482419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02501 13 324 C2C2-Gata Transcription Factor Family AT1G08010 36.646 1.34e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa3g02501 GATA 3.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02501 - - gmx:100816641 488.804