Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02497 ATGTTTGTAGTTATGGATTCCATGGAAAAAACCTCTGAGAAGTGCTTAGATTCTCAACTATGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCACTCAACACAAGAGTCTTTTACTTTCCTCAAGGTCACGCAGAACACGCTCATGGCAAAGTAGATTTCAGCAAAACGCGCGTTCCAGCTCTTATCCTTTGTAGAATCTCTGCCATGAAATACATGGCTGATGCTGATACTGATGAAGTGTATGTGAAAATGAGATTGACTCCTTTAAGAGAAAACGAGATGGGTTCAGAAGAAGATTGTTTCATCGGAAACAATGGCTTAGAGGGTCAAGAAAAGCCTGCTTCTTTTGCCAAGACATTGACTCAATCCGATGCCAACAATGGTGGGGGGTTCTCAGTTCCGAGATACTGCGCTGAGACTATTTTTCCTAGATTGGATTACTCTGCAGAACCACCTGTTCAGACGATTATTGCGAAGGATATGCATGGACAGTGTTGGAAGTTTCGGCATATCTATAGAGGAACACCGAGGAGACATCTTTTGACTACTGGTTGGAGCAACTTCGTGAATCATAAGAAGCTTGTTGCTGGTGATTCGATTGTGTTTTTGAGAGCTGAAAATGGAGATCTTTGTGTTGGTATAAGGAGAGCAAAGAAAGGTGGAATCGGCGGTGGAACTGATCAGTTTTCCAATTCTTCTGGTAATTGGAACCGTGTATCATCATCACCTTTGTTTGGTGCTGGTAATTTCTTGTGTGGAATAGGAAGAGTTGCTTCTGAGTCTGTTATTGAAGCTGTGAACTGTGCTGTGAATGGAAGATCCTTTGAGGTTGTGTATTATCCAAGAGCTAGTACTCCTGAGTTTTGTGTTAAGGTTTCTTCTGTTAAATCTGCAATGCAAATTCAATGGTGTTCTGGTATGAGATTCAAAATGCCATTTGAAACCGAAGATTCTTCTAGAATCAGTTGGTTTATGGGAACTATTTCTTCTGTTAAAGTTCAAGATCCAATTCGTTGGGCTGATTCTCCTTGGCGTCTTCTTCAGGTAGTGTGGGATGAACCAGATTTGCTTCAAAATGTGAAATGTGTAAACCCTTGGTTAGTTGAACTAGTTTCAAACATGCCGAGTTTCAACCTCTCGCCATTCACGCCACCGAGAAAGAAACCGAGGTTTATCCAAGATCCATATTTTCATCTCATAAACCAACTGCCAATGCCAACAACAGCAACAACATCATCAACGTCGTCGTTCTCCAACATTAATCTTCTCAATTACGCGAACTCGTCTCTCTGTAACATTCAAGATAGTACTACTACGACTAATAGTTATTCTGCGTCAAGCATACAGGGAGCCAGGCATGCTCAATTTGGACAAAACAACCAATCTGATTTTCCATTCAGCAAGCTTCACCATGACATGTTTCTTAGTAATTTGTCACTGTCGAGATTCAATCAACAACAAACTGTTATTAGGCCTTACAAGAGTATCAACAACAATACTAACAACACTGTTGACTTGTCTTGCTTGTTGAGTGTGGGAAATTCTGGTCAAAGTTTTAAGGAAGTATCCAATATTGAAGCAAAAGCACCCCACAAACACATTTTGTTGTTCGGAAAACTCATTCAAACCGAAGAAAACAACAACGAATCGAATATTTCAAAGAGTGGTTCTTTATCTGAAACGTGTTTGAAAACATCGAATGTTTCTTCTTCTGAACCAGTTGAGAATTCTTCTGATGCAGGGTCACCTTGGTACAAGGATCAACAACAACATAAGACTGATATTGTTGGAACAGAAAATATTACAACATTATGCATGGCTTCATAA 1833 0.4032 MFVVMDSMEKTSEKCLDSQLWHACAGAMVQMPPLNTRVFYFPQGHAEHAHGKVDFSKTRVPALILCRISAMKYMADADTDEVYVKMRLTPLRENEMGSEEDCFIGNNGLEGQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGTDQFSNSSGNWNRVSSSPLFGAGNFLCGIGRVASESVIEAVNCAVNGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVKVQDPIRWADSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPSFNLSPFTPPRKKPRFIQDPYFHLINQLPMPTTATTSSTSSFSNINLLNYANSSLCNIQDSTTTTNSYSASSIQGARHAQFGQNNQSDFPFSKLHHDMFLSNLSLSRFNQQQTVIRPYKSINNNTNNTVDLSCLLSVGNSGQSFKEVSNIEAKAPHKHILLFGKLIQTEENNNESNISKSGSLSETCLKTSNVSSSEPVENSSDAGSPWYKDQQQHKTDIVGTENITTLCMAS 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02497 610 Pfam Auxin response factor 267 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa3g02497 610 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Vifa3g02497 610 CDD B3_DNA 117 218 IPR003340 GO:0003677
Vifa3g02497 610 SUPERFAMILY DNA-binding pseudobarrel domain 112 219 IPR015300 -
Vifa3g02497 610 Gene3D - 116 220 IPR015300 -
Vifa3g02497 610 FunFam Auxin response factor 305 378 - -
Vifa3g02497 610 SMART B3_2 118 220 IPR003340 GO:0003677
Vifa3g02497 610 FunFam Auxin response factor 116 220 - -
Vifa3g02497 610 Gene3D - 304 378 - -
Vifa3g02497 610 MobiDBLite consensus disorder prediction 566 594 - -
Vifa3g02497 610 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 581 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa3g02497 610 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02497 Vifa-Chr3 666786974 666789227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02497 1 588 B3 DNA Binding Superfamily AT4G30080 53.160 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa3g02497 B3 5.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02497 - - tpra:123919517 1031.17