Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02482 ATGGCAAAAGACGTTGAAGTTGCTGAACGTGGCTCTTTCTCTAACAAAGACTACCATGACCCTCCTCCAGCACCACTGATTGATGCTGAAGAACTCACAAAATGGTCCTTTTACAGGGCCCTTATTGCCGAGTTCATTGCAACTTTGCTTTTCCTTTACGTTACTGTTTTGACTGTGATTGGTTACAGTATCCAAACTGATGTTAAAGCTGGTGGTGATGAGTGTGGTGGTGTTGGTATTCTTGGTATTGCTTGGGCTTTTGGTGGCATGATCTTTGTCCTTGTTTACTGTACTGCTGGAATTTCAGGGGGTCATATTAACCCAGCAGTGACATTTGGGCTACTGTTGGCGCGTAAGGTGTCTTTGGTGAGAGCAGTTATGTACATGGTGTCTCAGAGTTTGGGGGCTATTTGTGGAGTTGGGTTGGTTAAGACTTTTCAAAGTGCTTACTTTGATAGGTATGGTGGTGGAGCTAATTTTCTTCATGATGGGTATAGTACTAGTGTTGGAATAGGTGCTGAGATTGTTGGGACTTTTGTTTTGGTTTACACTGTTTTCTCTGCCACTGATCCTAAGAGAAGTGCTAGAGATTCTCATGTGCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTATTCATGGTTCATTTGGCAACCATCCCGGTCACCGGAACCGGCATTAATCCCGCTAGAAGCCTTGGTTCTGCTGTTATCCTCAACGAAGAAAAGATCTGGAATGACCATTGGATATTTTGGGTTGGACCGTTTGTTGGGGCGGCAATCGCGGCCTTCTACCACCAATTCATCTTAAGAGCAGGTGCTGCTAAAGCTCTTGGATCATTCAGGAGTAGCAATGCTAACTGA 864 0.4491 MAKDVEVAERGSFSNKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYVTVLTVIGYSIQTDVKAGGDECGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVMYMVSQSLGAICGVGLVKTFQSAYFDRYGGGANFLHDGYSTSVGIGAEIVGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGSAVILNEEKIWNDHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSSNAN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02482 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Vifa3g02482 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02482 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Vifa3g02482 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 281 IPR034294 -
Vifa3g02482 287 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02482 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02482 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02482 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02482 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02482 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02482 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02482 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Vifa3g02482 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g02482 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02482 Vifa-Chr3 640654423 640656719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02482 1 284 Major Intrinsic Protein MIP AT2G37170 80.282 7.12e-174 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02482 K09872 - gmx:100817292 506.523