Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02465 ATGAGCATCCCAATGGGTGCTCTCATGTTGCCAATGATACAGAATTTAGAGACAACATTAAAGGCAGGTGGAGTTCCACAAATGCCACAGTTTAGGCCTTCAACAGTGACTCCTGCATCAAATTGTGCCTCAGTCAACACCCAAAAAAGTTCAACTGGACTTAACTCATCCACAGAGAATAAGGTCATCAATAAGGAAGTAAAAGGCAAAGAAGAAGTTAAGAAGACTGAAAATGCAGTACAACTTGAGTCAATATTATCAATTCACAAATTGTCAAGACTTGGGAATCACATTGATGCTTTAAGAGAGGTTGCTAAACTTCCATTTTCGCCTCTAGATCCTCGAGAACCTGATACTTCTGTTGAGGTGTTTGAAAATTTATCTCCTCATGTCCAAGCTTGTATACCAGACCTCTTGAAGGTTGCTCTGACTTGTATGGACAATGTGGCAGACTCTGATGGATCACTTCGCTTGGCAGCAGATCAAATATATGCAGTAGAGTTAATTGGAAGTGCTACCAGAGTGCCAAAGTTACAGGCTAAGCTTCAAGAGTTCCTTGGTAGAAAAGAACTTGATAGGCATCTTGATACTGATGAAGCAATAGTTATTGCTGCTGCTACGGTGGCTGCTGCAACTGCACGGTGGACAACTCATGGACTGCATCCATTGTGCACTCTACTCCCTACAATTTACTTTTACCCATCCATCTGTTAG 714 0.4174 MSIPMGALMLPMIQNLETTLKAGGVPQMPQFRPSTVTPASNCASVNTQKSSTGLNSSTENKVINKEVKGKEEVKKTENAVQLESILSIHKLSRLGNHIDALREVAKLPFSPLDPREPDTSVEVFENLSPHVQACIPDLLKVALTCMDNVADSDGSLRLAADQIYAVELIGSATRVPKLQAKLQEFLGRKELDRHLDTDEAIVIAAATVAAATARWTTHGLHPLCTLLPTIYFYPSIC 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02465 237 Gene3D - 193 210 - -
Vifa3g02465 237 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN 73 150 IPR007231 GO:0005643|GO:0017056
Vifa3g02465 237 SUPERFAMILY Actin-like ATPase domain 131 210 IPR043129 -
Vifa3g02465 237 Gene3D - 142 192 - -
Vifa3g02465 237 MobiDBLite consensus disorder prediction 33 56 - -
Vifa3g02465 237 Pfam Hsp70 protein 137 210 IPR013126 GO:0005524|GO:0140662
Vifa3g02465 237 Pfam Nup93/Nic96 66 153 IPR007231 GO:0005643|GO:0017056
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02465 Vifa-Chr3 631588121 631589008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02465 145 210 Calmodulin-binding Proteins AT1G16030 39.394 8.91e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02465 K14309 - qsu:112025561 135.191