Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02461 ATGATCTTTGATATTGCAATTCTGGTTGCGGTATTGAGATCATCGTGTTCGTGGTTGGTGGACAAAAGTATCATTGCAAATAAAATAAGGTGTGCATCTAGAGCAACCGAAAGAGTTATATTGGAAAGCAATCCAACCATAGCTTGCCCTAATTGTCAACATGTTATTGACAACAATCATGTAACACAAGAGTGGCCTGGATTTCCGATAGGTGTTAAATTTGATCCATCTGATCAAGAGATAATATTGCACTTACTTGCAAAAGTTGGCGAAGAAAACTTAAAATCCCACCCTCTCATCGATGAATTTATCCCTACTATTGACATGGACGAGGGTATCTGTTATACTCATCCTCGATATTTACCAGGTGCTGCACAAGACGGAAGTGCTTCGCACTATTTCCATAGAGCAGTAAAAGCTTATAATTCTGGCAGTCGAAAGCGTAGAAGAATTAATGGTCAAGATGAGTTAAGTTATGTCCGCTGGCACAAGACCGGAAAGACTAAACCTATTTTTTTGAACGGAGTTCATATAGGAAGTAAAAAGATTATGGTTCTCTATTCTACTCAGGAGAGTAAAGATTCGTCTGCGAAAACTAATTGGATTATGCATCAATATCATCTTGGGACAAAAGAGAATGAAAAGCATGGAGAGTATGTTGCATCGAAAATCTTTTTACAGAAGCCGGACCATGTCAAACTGCGGGGCAAAGGTGATCAGGCTGATCGTCAAACTGCTGAAAATGTGAGTCCTTTCACTCCGAAATTTGTGACTCCTGAGCCTCATTGGATCAAAAAGCAACGCTTAGATATCGATCAAGCACAAGGATCTCATCATACTCGCGAGACTCCGCTAAACCTTCCTGAGTTAGAAAGTTTGTTATTTGATAGCGGGGATGACAATGATGAGTTTGCGAATATAGATCTGTCGATGTTAGCAACTCCGGTTAATGAAGGGATAGATAACAACATTGACCTGTCACAGTATCTATTAGATTCACAAGAATTTGCAGAAGCATTTCACTCGTTTAAGGATTTGATTCCAAGCAAGTCTTTGAATATGGATGGAGAAAATGGACAACATAATGGACAACATAGTCTTCCTATATATGCTCATCAAGGACAAGACCAATTGAAGAACAATATCCAAGATTACCAAAACCTTGATCTTGACATTGCAAAGAATACCAACAATATCGAAGATTACCAAAATCTTGACCTGGATATTATTGCCAAGAACAATACCGATGATAACCAAAATTTTGACCTTGACATTGCAATAAACAACTATATCAAAGATTACCAAAATCTTGACCTTGACAGTGCAAAGAAGAATGATATCAAGGATTACCAAAATCTTGAACTTGACACACCAAGTACCGATTTTCGATTAAGTCAGCAGGACTTCGGTTCGCAGGATAGCTATATTGCTTGGGATGGTTACAAACCAATCAACTAA 1458 0.3834 MIFDIAILVAVLRSSCSWLVDKSIIANKIRCASRATERVILESNPTIACPNCQHVIDNNHVTQEWPGFPIGVKFDPSDQEIILHLLAKVGEENLKSHPLIDEFIPTIDMDEGICYTHPRYLPGAAQDGSASHYFHRAVKAYNSGSRKRRRINGQDELSYVRWHKTGKTKPIFLNGVHIGSKKIMVLYSTQESKDSSAKTNWIMHQYHLGTKENEKHGEYVASKIFLQKPDHVKLRGKGDQADRQTAENVSPFTPKFVTPEPHWIKKQRLDIDQAQGSHHTRETPLNLPELESLLFDSGDDNDEFANIDLSMLATPVNEGIDNNIDLSQYLLDSQEFAEAFHSFKDLIPSKSLNMDGENGQHNGQHSLPIYAHQGQDQLKNNIQDYQNLDLDIAKNTNNIEDYQNLDLDIIAKNNTDDNQNFDLDIAINNYIKDYQNLDLDSAKKNDIKDYQNLELDTPSTDFRLSQQDFGSQDSYIAWDGYKPIN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02461 485 ProSiteProfiles NAC domain profile. 68 227 IPR003441 GO:0003677|GO:0006355
Vifa3g02461 485 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 17 386 IPR044799 GO:0003700
Vifa3g02461 485 SUPERFAMILY NAC domain 53 227 IPR036093 GO:0003677|GO:0006355
Vifa3g02461 485 Coils Coil 385 405 - -
Vifa3g02461 485 FunFam NAC domain-containing protein 8 77 231 - -
Vifa3g02461 485 Pfam No apical meristem (NAM) protein 69 208 IPR003441 GO:0003677|GO:0006355
Vifa3g02461 485 Gene3D NAC domain 77 231 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02461 Vifa-Chr3 629292867 629297040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02461 31 227 NAC Transcription Factor Family AT1G28470 48.515 9.53e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa3g02461 NAM 4.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02461 - - mtr:11406966 458.759