Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02456 ATGCATATTGATATCACCATGCAAACTCATCACTTCTCATCATCTTATGGCAGTGCCTCCTGCACCAGTTTAGATGATGAAAATTCAATCTTCCTCTCTCTTGCTCCTCCTGGCCACCAACATTTACCACCTTCCAAACTCTCATCCCCTCATATCCCTCCACTGCAACTCAAAACAACTACTTCCACTACCACTCCACCTCAGTATTGGATCCCTTCTCCTGCTCAAATCCTTATCGGTCCAACCCAGTTTTCTTGCACTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGGACAGGACCTGAATCCCTTAGAGGGCCAAAACCAGCGTCGTCTTCATCAATACTGAAACTCCCCTGCTATTGTTGCGCTGAGGGTTGCAAGAACAACATAAATTATCCAAGGTCAAGGCCACTAAAAGATTTCAGGACACTTCAAACACACTACAAGAGAAAGCACGGGGGGAAATCGTTCGAGTGCAGGAAGTGTAGGAAGACATTTGCTGTGAGAGGAGATTGGAGGACACATGAGAAGAATTGTGGGAAGCTTTGGTTTTGTATCTGTGGTTCTGATTTCAAACACAAAAGATCGCTAAAAGATCATGTTCGTACTTTCGGTAGTGGCCACGATCCACACACATTGGAATCTATTAGTTTTGATGAACACAAAGAAAATGGAAATTACAAGGAAGAAGAAGATGAAGAAAATGGAAGTGAAGATGAAGAAGACAATGACAGTGAAGTTGCTATTACTTTTAACTAA 801 0.4257 MHIDITMQTHHFSSSYGSASCTSLDDENSIFLSLAPPGHQHLPPSKLSSPHIPPLQLKTTTSTTTPPQYWIPSPAQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRTGPESLRGPKPASSSSILKLPCYCCAEGCKNNINYPRSRPLKDFRTLQTHYKRKHGGKSFECRKCRKTFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRTFGSGHDPHTLESISFDEHKENGNYKEEEDEENGSEDEEDNDSEVAITFN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02456 266 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Vifa3g02456 266 MobiDBLite consensus disorder prediction 225 243 - -
Vifa3g02456 266 Gene3D Classic Zinc Finger 83 106 - -
Vifa3g02456 266 MobiDBLite consensus disorder prediction 244 260 - -
Vifa3g02456 266 FunFam Zinc finger protein WIP2 140 222 - -
Vifa3g02456 266 SUPERFAMILY beta-beta-alpha zinc fingers 80 105 IPR036236 -
Vifa3g02456 266 PANTHER ZINC FINGER PROTEIN WIP2 61 249 IPR043584 GO:0003700|GO:0010468
Vifa3g02456 266 SUPERFAMILY beta-beta-alpha zinc fingers 156 191 IPR036236 -
Vifa3g02456 266 Pfam Zinc finger, C2H2 type 84 103 IPR013087 -
Vifa3g02456 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Vifa3g02456 266 MobiDBLite consensus disorder prediction 225 266 - -
Vifa3g02456 266 SMART c2h2final6 84 106 IPR013087 -
Vifa3g02456 266 SMART c2h2final6 134 166 IPR013087 -
Vifa3g02456 266 SMART c2h2final6 171 191 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02456 Vifa-Chr3 627581742 627582712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02456 26 227 C2H2 Transcription Factor Family AT1G13290 67.949 1.48e-106 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g02456 zf-C2H2_6 0.00061 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02456 - - mtr:25484895 405.216