Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02455 ATGGAGTTAGGAGGAGGTAGTTGCACAGATGAAACCACCACAAGCAATGGTTCTCTTTCCGTATCTCTTATACCGGCGAAACTAGCGAAACTATCTCCACCGCCGCCGATGAACACACTCAGCCGCGTTGGAAGCGGTGCTAGCGCTGTCACCGATCCTGAAAACTGTGTCGGCTCCGGCGAAGCCGAATCTCGAAAACTTCCGTCGTCGAAATACAAAGGCGTGGTGCCACAGCCGAATGGACGTTGGGGAGCTCAGATTTACGAGAAACATCAGAGAGTCTGGCTTGGTACATTCAATGAAGAAGACGAAGCCGCCAGAGCGTACGATATCGCCGCCTTGAGATTCCGTGGAAAAGACGCTGTCACGAACTGTAAGAGTTTCAGCGGCGTCGAAAACGATACCGACGAAAGTGAAGCCGAGTTTCTCAACTCGCATTCCAAATCCGAGATAGTTGACATGCTTCGGAAACATACATACGACGATGAACTTAAGCAAAGCACGCGAGATTCATGCGGCGGAAGGCCGCGGCGCAACGGAGAATCTGCCACAGCGTCACGTGGCGCGTGCGTTGCTAAGGCGCGTGAGCAGTTGTTTGAGAAAACGGTTACGCCAAGTGACGTTGGAAAGTTGAATCGGTTGGTGATACCGAAACAGCACGCGGAGAAACACTTTCCGTTGAATGCCGTGGCCGTAACTGTCTCTGGCGATGGAACCTCGCCGTCTGTGACGGCGGCGAAAGGTTTGCTATTGAACTTCGAAGACGTTGGAGGGAAAGTGTGGCGATTTCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTAACCAAAGGCTGGAGCCGGTTCGTTAAGGAGAAGAATCTCAAAGCCGGTGATGCGGTTCGGTTTTTCAGGTCGACCGGACCGGATAGACAGCTCTATATAGACTGCAAAGCCAGGAGCATTAGTGTTGTCGGTGTCAGTGTTGGTGAAACCAATGATAATACTTGTGGTTTGTTTATCCCGGTCCGACCGGTAGTTGAACCGGTTCAAATGGTTCGGCTTTTCGGGGTAAATATTTTGAAAATACCTGGTTCAAGTTCTGATGGTGTTAGCTGCAATGGGAAGAGAAAAGAGATGGAATTATTTACCTTAGAATGCAGCAAAAAGCCAAAGATAATTGGAGCCTTATAA 1176 0.4966 MELGGGSCTDETTTSNGSLSVSLIPAKLAKLSPPPPMNTLSRVGSGASAVTDPENCVGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGKDAVTNCKSFSGVENDTDESEAEFLNSHSKSEIVDMLRKHTYDDELKQSTRDSCGGRPRRNGESATASRGACVAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLNAVAVTVSGDGTSPSVTAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDAVRFFRSTGPDRQLYIDCKARSISVVGVSVGETNDNTCGLFIPVRPVVEPVQMVRLFGVNILKIPGSSSDGVSCNGKRKEMELFTLECSKKPKIIGAL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02455 391 SUPERFAMILY DNA-binding pseudobarrel domain 197 311 IPR015300 -
Vifa3g02455 391 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 66 363 IPR044800 GO:0003700
Vifa3g02455 391 Gene3D AP2/ERF domain 70 127 IPR036955 GO:0003700|GO:0006355
Vifa3g02455 391 SUPERFAMILY DNA-binding domain 70 124 IPR016177 GO:0003677
Vifa3g02455 391 FunFam AP2 domain-containing protein RAP2.8 70 127 - -
Vifa3g02455 391 CDD B3_DNA 198 300 IPR003340 GO:0003677
Vifa3g02455 391 SMART rav1_2 71 132 IPR001471 GO:0003700|GO:0006355
Vifa3g02455 391 MobiDBLite consensus disorder prediction 164 187 - -
Vifa3g02455 391 Pfam B3 DNA binding domain 199 305 IPR003340 GO:0003677
Vifa3g02455 391 CDD AP2 70 124 IPR001471 GO:0003700|GO:0006355
Vifa3g02455 391 Gene3D - 188 322 IPR015300 -
Vifa3g02455 391 ProSiteProfiles AP2/ERF domain profile. 71 126 IPR001471 GO:0003700|GO:0006355
Vifa3g02455 391 ProSiteProfiles B3 DNA-binding domain profile. 199 315 IPR003340 GO:0003677
Vifa3g02455 391 MobiDBLite consensus disorder prediction 30 73 - -
Vifa3g02455 391 Pfam AP2 domain 70 118 IPR001471 GO:0003700|GO:0006355
Vifa3g02455 391 SMART B3_2 199 314 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02455 Vifa-Chr3 624117094 624118269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02455 7 391 B3 DNA Binding Superfamily AT1G25560 58.942 2.01e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Vifa3g02455 B3 8.6e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02455 K09287 - gmx:100789009 536.184