Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02446 ATGTCATATACAAACATGGAAGTTCTTTCTCTCTCTGTCACACTCACCAAATCTCAAACCTTTCCCTCTCTCAAACAACCACTTCACCAACTTCCAATAACCACAACACTACCCAACAAAACCAATCTTTCTTCTTCATCTTCTTCTTCTTCCATTTCATGTAACTCCTCTTTTACCAGAATCTCAGCAACGAATGCACAACCATCAATTTCACAAACCAATATGTTGTTTCCTGCAGGAAATTCAAAGCATTGGATTGTTAGAATGGATAAGCCTGGTGTTGGTGTTGTTACCAAAGCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTTATGGGAAATGAAAAAGATGCACAAATGTGTTTGTATCATGTTTCTTGGAAAACCAACTATGGATTTTGTTGTGAAATTGATGAGGACTGTGCACTTGAGTTAGCTGGTGTGCCTGGTGTCTTGTCAGTTCAGCCAGACCATAATTTTGAGTCTGAAAATAAGAATTATGAAGGTAGAAACTTGGAAAATAGGCTGAATGTGCCTAGTTCTTTGGAAGAAACTCAGGAAACTCCAATGAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGTGCTGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTCATCATAGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTCATTGAATATGCCACAGAAGAGGCTGCAAGTTCAGCACTCAAAGAGATGAACGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCTAAGACTACCCCGCCAAGATACAACAAAGGTCGCGCCAGATCATCTGCATGA 864 0.3854 MSYTNMEVLSLSVTLTKSQTFPSLKQPLHQLPITTTLPNKTNLSSSSSSSSISCNSSFTRISATNAQPSISQTNMLFPAGNSKHWIVRMDKPGVGVVTKAQIVDYYAQILTKVMGNEKDAQMCLYHVSWKTNYGFCCEIDEDCALELAGVPGVLSVQPDHNFESENKNYEGRNLENRLNVPSSLEETQETPMKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYATEEAASSALKEMNGKIINGWMIVVDVAKTTPPRYNKGRARSSA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02446 287 SUPERFAMILY RNA-binding domain, RBD 186 284 IPR035979 GO:0003676
Vifa3g02446 287 FunFam Organelle RRM domain-containing protein 1, chloroplastic 72 162 - -
Vifa3g02446 287 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 13 264 IPR039206 GO:0016554
Vifa3g02446 287 Gene3D - 163 287 IPR012677 -
Vifa3g02446 287 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 71 162 IPR037045 -
Vifa3g02446 287 SMART rrm1_1 196 269 IPR000504 GO:0003723
Vifa3g02446 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 273 IPR000504 GO:0003723
Vifa3g02446 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 263 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02446 Vifa-Chr3 618266286 618268866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02446 182 280 C2H2 Transcription Factor Family AT2G19380 31.313 6.44e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02446 - - mtr:11405373 457.603