Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02432 ATGATTTCGACTGGGATTAACTTGGTAATGACTGTGATTGGTTTTGCTGTTAGCACAATGTTCATTGTTTTTGTTTGTACTAGGCTCATTTGTGCTAGGATTCACTTGAATGCTTCTAGGAGATCCTTTCTCGTTGCTTCTAGATCCAATCTCAGCTTGATGGAGAGGGGTTGTCAAGGTCTCGAACGCGTAGATGTAGCTAAATTTCCAGTTAAGAAGTACAGTGACAAGTTTTTTGCAGCTGGGGAAAATTTTCAATGCACAGTCTGTCTCTCAGAGTACCAAGGTGAAGATACACTGCGTATCCTTCCCCATTGTGGACACTCCTTCCATATGGCCTGCATAGACTTATGGCTGCAGCAGAACGCAACTTGTCCCGTTTGTCGAATATCACTGCGTGAAGTTTCTGAGAGAACGCAATCAGTGCAACCTGTATATAGCTCTCATTATGGGACGGAGTCTTTTGACACTCATCATTATCATTGTATAATGGCTGATAATGGATTATCAACAAGAACCCCTGATAACCGCGGAGTGAACCCTATTCAAGAGGATCACTTTCCATCTGAGGGCGATGGAGTAGTTGATACGGAGAGTATCACCTCCTTATGTCAGGGTGATTTCATTAAAGACGAAGAGAAGAAACATGTAGAGAGCCCATCAAATTTATAG 672 0.4256 MISTGINLVMTVIGFAVSTMFIVFVCTRLICARIHLNASRRSFLVASRSNLSLMERGCQGLERVDVAKFPVKKYSDKFFAAGENFQCTVCLSEYQGEDTLRILPHCGHSFHMACIDLWLQQNATCPVCRISLREVSERTQSVQPVYSSHYGTESFDTHHYHCIMADNGLSTRTPDNRGVNPIQEDHFPSEGDGVVDTESITSLCQGDFIKDEEKKHVESPSNL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02432 223 CDD RING-H2_EL5-like 86 129 - -
Vifa3g02432 223 PANTHER OS11G0150450 PROTEIN 1 184 - -
Vifa3g02432 223 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Vifa3g02432 223 SUPERFAMILY RING/U-box 81 135 - -
Vifa3g02432 223 SMART ring_2 87 128 IPR001841 -
Vifa3g02432 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 135 IPR013083 -
Vifa3g02432 223 FunFam E3 ubiquitin-protein ligase ATL6 49 135 - -
Vifa3g02432 223 Pfam Ring finger domain 86 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02432 Vifa-Chr3 615638283 615640490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02432 13 132 C3H Transcription Factor Family AT4G10150 37.097 6.42e-21 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02432 - - gmx:100794979 378.637