Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02429 ATGAGTAGCAGTGACCCCTACGGTTTCCCGGAGGATCTCCGCCGAATGATATCATCAAGAACCACCACCACAGAACCACCACCACCACCCTATACTCTCTATGCTTCTTCTTTTCATCCACCTAATAATTATTCTTATGACCCTTCTTCTTCTTCTTCTTCTATCATGGTTGGTGACGTTTTCTATCCTCGTAGTGCCTTCACTCACACTCACCAACATCACTATAATTATTCCTCCTCCACTCTCAACATTCCTTCAACTAGCTCCACCACTATTCCTGCTGCAAATCCTAATTCAGATCATGCTACTGCTTCTGCTGCTTTCTTTGTTGGCTTAGACACAAACTCTGCTGATAACAAAGAATGGCTTGGTAACTTTGATTCTTGTAACAATAGATGGCCTAGACAAGAAACTCTTTCTCTTCTAGAAATCAGATCTCGTCTTGATTCTAAGTTCAAGGAGAATAATCAGAAAGCACCCTTGTGGAATGAAATTTCTAGGATAATGGCTGAAGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAAACAAAGGAAGGTAAGGCTAGTAGACAAGATGGTAAACACTACAGATTCTTTAGGCAGCTTGAAGCAATATGTGGAGAATCAAATACAAACACTCATGCTTTAGTTTCAGACAAAGCCCCTCATGCTGGTTTTGTTGCAACTCAAACTCCAAGCTTCACAATGAACCAAGAAAATGTTAATGGTGTTGATGATCATAGTTTGATCAATAGTCTTAAGTACAAATCAGATAGCTTAATGAGTTTCTCGAATTCGTCTGAGTTTGAGACATCGTCATCGGAGAACAACGACGAGGATCTCTCGGCTATTGCACATTCGATGAGGTCGTCGTCGAAGCAGAAAGGGCTAGAGTTAGAGAAAAGTGATAGGAGGGTGAGAAAAAGTTGGAGAGGTAAAGTGGAGGAGATTGTAGATTCTCACATGAAGAAGATTATAGAGACACAAGATGCATGGATGGAGAGAATGTTGAGTGTGGTGGAACAAAGAGAACAAGAGATGGCATCAAAGGAAGAAGAAAGGAAGAGAAAAGAGTCAATGAGGTTTGATCAAGAGATACATAAACTTTGGGCTAAAGAAAAAGCTTGGGTTGAAGCAAGAGATGCTGCATTGTTAGAAGTTGTAAGAAAACATATTGGGATAGAAGGAACAAATAACAAGAGTGAAAATGGTAGAAACTATGAATACCCTTTTGAAAGTTTGGAGAATCAAAGATGGACAGAAATGGAGATTTCAAGTTTGATACAACTAAGGACTAGTTTTGAACATCAAGTAAGAGAAAAGGGGTATTTGGAGGATGGTGTTTGGGATGAAATAGCTGAGAAAATGGTGTATATGGGATTCAACAGAAATGGAGCAGAATGCAAGAAAATATGGGATGAGATTAGTGTATCCCTTAGAAGGACAGTGGACTGTGGAGTCAAGATCACAAGACCTTGGTGTTTGGGACTTAAGGTGACAGATGATGACGACATTTGA 1557 0.3956 MSSSDPYGFPEDLRRMISSRTTTTEPPPPPYTLYASSFHPPNNYSYDPSSSSSSIMVGDVFYPRSAFTHTHQHHYNYSSSTLNIPSTSSTTIPAANPNSDHATASAAFFVGLDTNSADNKEWLGNFDSCNNRWPRQETLSLLEIRSRLDSKFKENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGESNTNTHALVSDKAPHAGFVATQTPSFTMNQENVNGVDDHSLINSLKYKSDSLMSFSNSSEFETSSSENNDEDLSAIAHSMRSSSKQKGLELEKSDRRVRKSWRGKVEEIVDSHMKKIIETQDAWMERMLSVVEQREQEMASKEEERKRKESMRFDQEIHKLWAKEKAWVEARDAALLEVVRKHIGIEGTNNKSENGRNYEYPFESLENQRWTEMEISSLIQLRTSFEHQVREKGYLEDGVWDEIAEKMVYMGFNRNGAECKKIWDEISVSLRRTVDCGVKITRPWCLGLKVTDDDDI 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02429 518 ProSiteProfiles Myb-like domain profile. 131 190 IPR001005 -
Vifa3g02429 518 PANTHER FI21293P1 96 499 - -
Vifa3g02429 518 Coils Coil 346 373 - -
Vifa3g02429 518 Pfam Myb/SANT-like DNA-binding domain 430 497 IPR044822 -
Vifa3g02429 518 Pfam Myb/SANT-like DNA-binding domain 131 218 IPR044822 -
Vifa3g02429 518 FunFam trihelix transcription factor PTL-like 133 195 - -
Vifa3g02429 518 CDD GT1 131 197 - -
Vifa3g02429 518 ProSiteProfiles Myb-like domain profile. 424 489 IPR001005 -
Vifa3g02429 518 Gene3D - 432 494 - -
Vifa3g02429 518 Gene3D - 133 195 - -
Vifa3g02429 518 SMART sant 428 491 IPR001005 -
Vifa3g02429 518 SMART sant 129 192 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02429 Vifa-Chr3 615169160 615171275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02429 132 494 Trihelix Transcription Factor Family AT5G03680 42.929 8.87e-87 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa3g02429 Myb_DNA-bind_4 7.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02429 - - gmx:100787750 551.592