Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02407 ATGTTTGTTACACTTTGCTTTGCTCTCACTGGTTGCAGTAGTATAAACCATACTATAGCACCTTCTTTGTCTTACTCTTATTCGCATCCATTTTCGCACAATCCAAGTTGCTCTCTAACGCGGAATTCCACTGAGAATTTTGAGTTTTCGACGAGCAAAGATGATCATATTTGGAACTGTGGTGAAGGGACTAATGGTTCTGTTCATAGCAGGTTTAAACCAATTGGTGATGGTGTTGTTGGTTTGTCGAATCATGGAGGTGGAACCGATATCAGTTTGTTCATGCAACAAGGGAATAATAGTCAGTATAAAACTACTAGTTCGGAAAATCATTCTTTTTTTCCTTCTGAATTGCCTGCTAGGCCTAGATTTGAAGCTCATTCGGGGGATTCAAGAGGAAATAACTCAGAGAATCTGAGAGTGTTTGAAGGTTTAGATGGTGGTAAGATGAGGAATATTTCAAGACCAGAGAGAATTGTTTGGGATATTGTTTCAGAATCTGTCCTTATTGTTTCGCTGATAACTCAGGAGTTTACCGGTGAAGTAATGGCATCAACTCAGGAATACTTGAAGAATTTGATTGAGAACAAGAAAGAAGAATTGGTCAGCCTTCAAAACCGGCTTGAGAAAAGTTCTGATCTTACCAAGGATAATCTTTCAAAGGGCAATAAAGTTCAGTTAGAGATTTTACTTGCCATCAAGATGGGGCTGTCGAGCTTCTTATACGGTAATCTTCAATTATCTGAGATGGTAGAGATTTTCTTGTATAGGAGATGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTATTGATGATTGTGACTGTAAGATTTGCTCGGGAAATAAAGGGTTTTGTAGCTCTTGTATGTGTCCTGTTTGTTTGAACTTCGATTGTGCAAGTAACACTTGTAGCTGGATTGGATGCGATGTTTGTTCACACTGGTGCCATGCTGTATGTGGCCTCCAAAGGAAGCTTATCAAACCAGGGCCAAGCTTGAAGGGGCCTTCTGGGACCTCGGAAATGCAGTTTCATTGTATCGGATGCGGACATGCCTCAAAAATGTTTGGATTCGTCAAAGACGTCTTCATGTGTTGTGCAAAGGATTGGGGACTTGAGACCTTGTTGAAAGAGCTTGACTGTGTCAGGAGGATTTTCATGGGAAGTGAAGATCACAAAGGGAAGGAATTGCATTTTAAAACCGATGACTTGCTATTAAAGCTTCAAACTAAAATAGTATCTCCTTCAGATGCCTGCAATTACATCATGCAATTTTTCAACTACGCGGAGAACATGACAAACTATCCGGCTTCTGGTTTTTCTTCAAAGGAATTGGTAGTCCATCAAGCCAACCTTCCAAAGGACACACTATCTCTTCCAAAAGCTAACTCTTCAATACCAAAATACCCTTATGACTCAAGCTACTCGAGGCCACATTCCAGTGCTTCGTCAAAAGATCTTCATCAAAAAGACCTCAAAGCTTCCATCTTAAGCGAGCCAAAAAACGACGGAAAAAGGAAAGGAAGAGTTATGAACATCTCGTCGCAGTATCCCTCGCCGACATCTTTCTCCTTTAACCGTCCACTACCGCATCCGACAGCTCCATCTCCATGTCATGCTCACAACACACTGCTCCGCCATAACCCCACTTTTCGGCAATTTGTAAATCCCATTCCTTTGAAGCGTCCAGTAATGACAGCTGAGCCATCAATCATTATTAGGGAGCTTGAGTCAGATGATTTATTCTTAATATTTGCATCAGATGGCCTTTGGGAACGATTAAGCGATGAAGCAGCGGTTGATCTTGTTTTCAAATATCCAAGAGCGGGAATTGCCAAGAGACTAGTATGA 1848 0.4118 MFVTLCFALTGCSSINHTIAPSLSYSYSHPFSHNPSCSLTRNSTENFEFSTSKDDHIWNCGEGTNGSVHSRFKPIGDGVVGLSNHGGGTDISLFMQQGNNSQYKTTSSENHSFFPSELPARPRFEAHSGDSRGNNSENLRVFEGLDGGKMRNISRPERIVWDIVSESVLIVSLITQEFTGEVMASTQEYLKNLIENKKEELVSLQNRLEKSSDLTKDNLSKGNKVQLEILLAIKMGLSSFLYGNLQLSEMVEIFLYRRCRNVTCKSLLPIDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHAVCGLQRKLIKPGPSLKGPSGTSEMQFHCIGCGHASKMFGFVKDVFMCCAKDWGLETLLKELDCVRRIFMGSEDHKGKELHFKTDDLLLKLQTKIVSPSDACNYIMQFFNYAENMTNYPASGFSSKELVVHQANLPKDTLSLPKANSSIPKYPYDSSYSRPHSSASSKDLHQKDLKASILSEPKNDGKRKGRVMNISSQYPSPTSFSFNRPLPHPTAPSPCHAHNTLLRHNPTFRQFVNPIPLKRPVMTAEPSIIIRELESDDLFLIFASDGLWERLSDEAAVDLVFKYPRAGIAKRLV 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02407 615 Coils Coil 187 214 - -
Vifa3g02407 615 CDD PHD_OBE1_like 289 348 IPR047578 -
Vifa3g02407 615 SUPERFAMILY PP2C-like 556 615 IPR036457 -
Vifa3g02407 615 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 250 271 IPR004082 -
Vifa3g02407 615 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 174 196 IPR004082 -
Vifa3g02407 615 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 369 388 IPR004082 -
Vifa3g02407 615 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 296 316 IPR004082 -
Vifa3g02407 615 Gene3D - 534 615 IPR036457 -
Vifa3g02407 615 MobiDBLite consensus disorder prediction 469 488 - -
Vifa3g02407 615 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 18 483 IPR004082 -
Vifa3g02407 615 Pfam Protein phosphatase 2C 560 602 IPR001932 -
Vifa3g02407 615 Pfam PHD - plant homeodomain finger protein 259 383 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02407 Vifa-Chr3 613838166 613840370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02407 546 615 PP2C-type Phosphatase Gene Family AT4G33920 68.571 4.15e-27 109