Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02398 ATGGACTTGCCAAGACACCGTGCCACACCAACAACCTCTCTAAGGGACACATCAGACTCCTCCACTGGTAGCTGGGATGCCATCGAATGGACCAAAATTGAGCCAATTGCGCGGTTTGTCTCTCATGCCAATCTTGATTTCTTGCTCGAGGACGAACAAGTTATGGCAGAAGGACATGGTGTCGTTCTTGTCAATACAGATGATGCAGGCGTGTTGATTGTAACAAACTTTCGTGTAATATTTTTGAGCGAGGGAACTAGAAAAGTTATTGCTTTTGGAACAATACCACTAGCAACCATTGAGAAGTTTAACAAGACATCTGTTAAGGTTCAGTCAAATACTCGGCAATTAGACAAGACACCAACACAAAGACTGCTGCAGGTGATTGGGAAAGATATGAGAATTATAGTCTTTGGTTTTAGGCCTCGTACGAAACAGAGACGTGCAGTATATGATGCACTACTGAAGTATACAAAGCCAACAATATTATGGGATCATTATGCTTTTATGCACGGGCCTTCCAGTTTTCAGAACACTTCTCCGTTGGTGCGCTTATTAGATGAATATTTTCGACTTATTGACAAACTTTCTCGTCATGCTTCATTGGACATGATTGAAAGTGGGTCCTTCACCTTGTCAAATGAGTTATGGAGAATAAGTGGTGTGAATTCCAATTATACAATGTGCCAGAATTATCCATTTGCTTTGGTTGTTCCAAAGAGCATTAGTGATGATGAAGTGCTCCAGGCTTGCAAATTCCGCGCAAGATGCCGACTACCTGTAGTTTCTTGGTGTCATCCCGTTACTGGCGCAGCTCTTGCACGTTCTTCCCAGCCTTTAGTTGGTCTCATGAGGAATATGAGGAGCACCATGGATGAAAAACTTGTGGCTGCACTTTGCAGCAACCTTGATGGCTCGAGGAGAAAGCTATACATCGCTGATGCAAGACCAAAGAAAAATGCATTAGCTAATGGAGCCATGGGAGGTGGTTCAGAGTCATCATCAAACTATTTTCAATCTGAGGTTATCTTTTTTGGGATAGACAACATTCATGCAATGAGAGAGAGCTTTGTTCGGCTTCGAGAATACATGGACACTCATGGCAGAACATCATCTGATGGAATGTCATCTTTTTTGAGACATGGTGGGTCAATATGGGGTGGCGGCAATTTAAGCAGCATGTCTGCTTCAGTGTCAACCCTTGGGGACAGTGGATGGTTGTTGCACATTCATAATGTCTTAGCTGGTGCAGCTTGGATTGCTGCTCGTATTGCTATGGAAAAGGCTTCTGTTCTTGTACATTGCAGTGACGGATGGGATAGGACAAGCCAGTTAGTTTCTCTTGCTAATTTGTTGCTTGATCCGTATTATCGGACATTCAGAGGGTTTCAGGCACTTGTTGAAAAAGACTGGCTAGCATTTGGTCATCCGTTTTCTGATCGTGTGGGAACACCATCTATCTCTGAATGTGGCAACATGTCTTTCGAGTTATCTAGGCAACAGTCTTCAACAAGCATCCCATCATCACCCATGCCCCAGTCATCAGGGACATTCGCGTCTCAACCTCCAGTTTCATCTCATGCTCATAACTCAAACAACTACTCTCCCATTTTTCTGCAGTGGGCTGACTGTGTGTCACAACTAATGCGGATGTATCCTTTTGCTTTTGAGTTTTCTGCGGCTTTCCTGGTGGACTTCTTAGACTGCATGTTCTCTTCTCGCTTTGGAAATTTCTTCTTTAATAGTGAGAAGGAGAGGCTGCAGTGCAATGTTTTTGAAAGTTGTGGATGTCTATGGGCATACCTGGCTGATACGCGGAGATCAGAAGGAGCTTCCCATGTGCACTGTAATCCCTTTTATGATCCACTGAAGTACAATGGGCCTCTTCTCCCCCCGGCAGCAGCATTAGCCCCGACATTATGGCCCCAATTCCACCTTCGTTGGGCCTGCCCAGAAGAAGCACAGAGTGGAGAGATTGAAGCACAATGTAGGAAGATAAAACTGAACAACTCTGAGATGCAGAAGGCTAAAGAAGTGGCAGAAAGGAAACTTAGAGAAAATACATATACTATAGAATCGTTGAATGCTGAATTGCGCCGTGAGAAACTATTAAACATCTCAGCTATGACCAAGGCGAAAAGGATAATAAAAGAAAACACAGACATAAAGCGTGCAATTCAGTCAATTGGGTGCAAGATTCACATTTCTAATAGTGGTGATTGCATTCTTGACATTGAAAACAACCCAGAAAATGCAGTTCAGAAATTGCATTTGTCCTCTAGGCAAGTATCAAGTAGTGCTGTGATTAACGACAAAAAGGATATATCTCTTTCTGTAACAGAAGATGACGATGGAAACAATGTTATTAGTCGAATTTGTGAAACTCTATGCCCTTTTCGCAGTAGAGATGGAGGCTGCATGTGGCCAAATGGTGCTTGTGCTCAACTAGGCAGCCAGTTTGTTGGTTTGAAGGCAAATTTTGATGCATTTGACCGGCTTTCGATTGATGACAGTTATTTCAAGCCCAAGTGA 2532 0.4329 MDLPRHRATPTTSLRDTSDSSTGSWDAIEWTKIEPIARFVSHANLDFLLEDEQVMAEGHGVVLVNTDDAGVLIVTNFRVIFLSEGTRKVIAFGTIPLATIEKFNKTSVKVQSNTRQLDKTPTQRLLQVIGKDMRIIVFGFRPRTKQRRAVYDALLKYTKPTILWDHYAFMHGPSSFQNTSPLVRLLDEYFRLIDKLSRHASLDMIESGSFTLSNELWRISGVNSNYTMCQNYPFALVVPKSISDDEVLQACKFRARCRLPVVSWCHPVTGAALARSSQPLVGLMRNMRSTMDEKLVAALCSNLDGSRRKLYIADARPKKNALANGAMGGGSESSSNYFQSEVIFFGIDNIHAMRESFVRLREYMDTHGRTSSDGMSSFLRHGGSIWGGGNLSSMSASVSTLGDSGWLLHIHNVLAGAAWIAARIAMEKASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFRGFQALVEKDWLAFGHPFSDRVGTPSISECGNMSFELSRQQSSTSIPSSPMPQSSGTFASQPPVSSHAHNSNNYSPIFLQWADCVSQLMRMYPFAFEFSAAFLVDFLDCMFSSRFGNFFFNSEKERLQCNVFESCGCLWAYLADTRRSEGASHVHCNPFYDPLKYNGPLLPPAAALAPTLWPQFHLRWACPEEAQSGEIEAQCRKIKLNNSEMQKAKEVAERKLRENTYTIESLNAELRREKLLNISAMTKAKRIIKENTDIKRAIQSIGCKIHISNSGDCILDIENNPENAVQKLHLSSRQVSSSAVINDKKDISLSVTEDDDGNNVISRICETLCPFRSRDGGCMWPNGACAQLGSQFVGLKANFDAFDRLSIDDSYFKPK 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02398 843 Coils Coil 663 697 - -
Vifa3g02398 843 PANTHER MYOTUBULARIN-RELATED 18 766 IPR030564 -
Vifa3g02398 843 CDD PTP-MTM-like 257 547 - -
Vifa3g02398 843 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 211 649 IPR029021 -
Vifa3g02398 843 SUPERFAMILY PH domain-like 48 171 - -
Vifa3g02398 843 SMART gram2001c 37 107 IPR004182 -
Vifa3g02398 843 ProSitePatterns Tyrosine specific protein phosphatases active site. 433 443 IPR016130 GO:0016311|GO:0016791
Vifa3g02398 843 MobiDBLite consensus disorder prediction 502 529 - -
Vifa3g02398 843 MobiDBLite consensus disorder prediction 1 23 - -
Vifa3g02398 843 Pfam Myotubularin-like phosphatase domain 177 586 IPR010569 -
Vifa3g02398 843 Gene3D - 59 158 IPR011993 -
Vifa3g02398 843 ProSiteProfiles Myotubularin phosphatase domain. 197 645 IPR010569 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02398 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 65.105 0.0 1126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02398 K18081 - gmx:100781842 1316.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02398 3 611977044 611996326 Vifa3g02398 3 611977044 611996326 ECH