LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g02384	ATGTTGGAAATGGAGAAGGATTTTGATTCCAAGGTCAAGATTCAACGGACTTCTTCCTCTTCCAATGGTGCTGGGGTTGTTCAGAGATCCAAAAGCTTCGTTTTTAGGGCTCCTCAGGAGAATTACACCATTCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAGATCTATGGTGTTGGCTCTTATTCTAAGGTTGTGAGGGCAAAGAAGAAAGACACAGGTGTTGTGTATGCATTGAAGATCATGGACAAAAAATTTATTACCAAAGAGAACAAAACTGCATATGTGAAGTTGGAACGCATAGTGTTAGATCAATTGGATCATCCTGGCATTGTGCGGCTATATTTCACATTTCAAGACTCATTTTCTCTATACATGGCACTTGAATCCTGTGAAGGTGGAGAACTCTTTGATCAAATTACCAGGAAAGGCCGTCTAACTGAGGAGGAAGCACGGTTCTATGCAGCTGAAGTTGTTGATGCTCTTGAATACATACATGGTTTGGGAGTGATACATCGTGATATTAAGCCAGAGAACTTATTACTCACAGCTGAAGGACATATTAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAAGATAGTCAAATTACCGTCCTTCCAAATGCAGCATCAGATGACAAAGCCTGCACATTTGTGGGAACAGCTGCTTATGTCCCTCCAGAGGTTCTTAATTCTTCTCCCGCAACTTTCGGAAATGACCTCTGGGCACTTGGCTGCACATTATACCAAATGCTTTCTGGAACTTCTCCTTTTAAAGATGCAAGTGAATGGCTTATTTTCCAAAGAATTATAGCAAGGGAAATTCGATTTCCAGATTACTTTTCAGATGAAGCAAGAGACCTTATTGACAGGCTATTGGATTTAGACCCGAGCAGGAGACCAGGGGCAGGACCTGATGGTTATGCTATTTTGAAAATACATCCCTTTTTCAAGACAGTTCTCTGGGATAACTTAAGGGCACAAACTCCTCCAAAACTTGCTCTGGAACCCGGGACTCAATCGCCTGCTGCCGATGATGTTCAGGAGTCATCATGGAGTCCTTCTCACATCGGCGACGGTTCTGCAGCTTCGGCTAAACAGCCTGATGGCACTACATCACCTTCAGAGGGAACCGGTTCTATAACCAGGCTTGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAATTTTTGGATCCCGGGGAATCTGTTCTTATGATCTCCATGGTGAAGAAATTACAAAAAATAACAAGCAAGAAGGTTCAGCTCATCCTTACCAACAAGCCGAAGTTGATCTATGTGGACCCTTCAAAATTAATTGTAAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACACCTAAAAAGGTTATGTCTTTTGAGGATGCTAAGCAAAGAGCATCTATATGGAAAAAGGCAATTGAAGGACTTCAAAACCGGTGA	1506	0.415	MLEMEKDFDSKVKIQRTSSSSNGAGVVQRSKSFVFRAPQENYTIQDFELGKIYGVGSYSKIYGVGSYSKVVRAKKKDTGVVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDSFSLYMALESCEGGELFDQITRKGRLTEEEARFYAAEVVDALEYIHGLGVIHRDIKPENLLLTAEGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPDYFSDEARDLIDRLLDLDPSRRPGAGPDGYAILKIHPFFKTVLWDNLRAQTPPKLALEPGTQSPAADDVQESSWSPSHIGDGSAASAKQPDGTTSPSEGTGSITRLASIDSFDSKWQQFLDPGESVLMISMVKKLQKITSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVTSPSHFKICTPKKVMSFEDAKQRASIWKKAIEGLQNR	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g02384	501	CDD	STKc_PDK1	45	323	IPR039046	GO:0004674
	Vifa3g02384	501	Gene3D	-	381	501	IPR011993	-
	Vifa3g02384	501	FunFam	3-phosphoinositide-dependent protein kinase 1	371	501	-	-
	Vifa3g02384	501	Gene3D	Phosphorylase Kinase; domain 1	60	139	-	-
	Vifa3g02384	501	SMART	serkin_6	56	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa3g02384	501	SUPERFAMILY	Protein kinase-like (PK-like)	61	367	IPR011009	-
	Vifa3g02384	501	FunFam	3-phosphoinositide-dependent protein kinase 2-like	59	139	-	-
	Vifa3g02384	501	SUPERFAMILY	PH domain-like	317	500	-	-
	Vifa3g02384	501	FunFam	3-phosphoinositide-dependent protein kinase 2-like	140	338	-	-
	Vifa3g02384	501	ProSiteProfiles	Protein kinase domain profile.	56	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa3g02384	501	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	175	187	IPR008271	GO:0004672\|GO:0006468
	Vifa3g02384	501	PANTHER	SERINE/THREONINE-PROTEIN KINASE	30	352	-	-
	Vifa3g02384	501	MobiDBLite	consensus disorder prediction	349	386	-	-
	Vifa3g02384	501	Pfam	PH domain	398	500	IPR033931	-
	Vifa3g02384	501	Coils	Coil	481	501	-	-
	Vifa3g02384	501	Pfam	Protein kinase domain	61	309	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa3g02384	501	Gene3D	Transferase(Phosphotransferase) domain 1	140	335	-	-
	Vifa3g02384	501	MobiDBLite	consensus disorder prediction	338	386	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g02384	Vifa-Chr3	607368651	607374246	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g02384	1	501	AGC Kinase Gene Family	AT3G10540	80.040	0.0	814

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_PDK1	Vifa3g02384		Pkinase	3.5e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g02384	K06276		-	gmx:100788780	895.19