Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02379 ATGGAGATAACTCACGACAAGGAAGCTCTTCCTAACAGAAAGCCTCCCACCGAACAGGACATTATTGATGAACTAAAATTGAGATCAAAGAAGTATCTCAGAGGAAAAGGTGCTAATTTGAAGGGTTTAAAGGATAAAAAGCTTAGGAGTCAGTTAGTTGCTAGAGAGAAATTATATGGAGAATCTGCAAAAGCTGCTGCCCAGGCTGAGAAATGGATTATGCCTAGTGATCAAGGTTTTTTGGAGGCTGAAGGTCTAGAAAAGACGTATAGGATCAAGCAGGAGACAATAGCCCGTGAAGTCGATATTTTAAGCTCAAGGAACCAATATGATATTACTTTACCAGAGCTTGGTCCATATACTCTAGACTTCACTCCTAGTGGCCGGTATATGGCTGTTGGTGGTCGCAAAGGCCACCTAGCAATTGTGGACATGATGAATCTGAGCCTTATCAGAGAGCTTCAGGTAAGAGAAACTGTGCGTGATGTGGCATTTTTACATAATGAGCTCTTCTTTGCTGCTGCCCAGAAAAAGTATTCATACATATATAGTCGTGAAGGCACAGAGCTTCACTGCCTAAAGGATCATGGTTCAGTGTTGAGGCTGCAGTTTCTAAAAAACCATTTTCTCCTGGCTTCTACCAACAAATTTGGGATGCTTCTTTATCAGGATGTTTCAACGGGTGATGTAGTTGGGAAATATCGAACTGGTTTGGGACGTACAAATGTGATGCAAGTAAACCCTTACAATTCGGTTGTTTCTTTAGGTCACTCAGCCGGTACAGTTACTATGTGGAAGCCAACTAGTTCTTCTCCCCTTGTCAAGATGCTATGTCATCACGGGCCAGTCTCGGCACTGGCGTTTCACCCAAATGGCCACATAATGGCTACAGCTGGGAAAGATAAAAAAATTAAACTTTGGGACTTGAGGAAGTACGAGGCTTTTCAAACATTACCAGGCCATGCAAATACTTTGGAGTTTAGTCAAAAAGGCTTGCTTGCTTGTGGTAATGGTTCATATATCCAGGTTCTTAGGGATGTTTCTGGTGCACAGAACTATTCAAGTTACATGACTCATTCAATGGTAAAGGGTTATCAGATAGGGAAGTTAGCTTTCCGACCATACGAAGATGTTCTAGGCATAGGGCATTCAATGGGTTGGTCTAGTATTCTTATTCCAGGAGCAGGAGAACCCAACTTTGATTCATGGGTTGCAAATCCATTTGAGACACCTAAACAGAGAAAAGAAAAGGAAGTACAGTCTCTTCGTGATAAGCTTCCAGTCGAGACAATCATGCTAGATCCCAGCAAGATCGGTACTGTGAAATTTACTAAAAAAGAGAAGCCAACTGTGGAAAAGATGGATGCTGATATGGAAGCTGCTGTTGAAGCTGTCAAGGGCAAAAAACTGAAAAAGAAAACAAAAGGAAGAAGTAAGGCAGGTAAAATAATGCCTAAAAAGCAAGATGCAATTGCCACGGCAAAGAGGCCTTATTTGGAGCAGAAAATTCAAGAAGAGAAAAAAGCATCTAGTAAGAAACAGAAAACCAATGGGGGAGTTGAACTACCAAAATCTTTACAGCGGTTTGCTCATAAGAAACCATCATCATAA 1611 0.414 MEITHDKEALPNRKPPTEQDIIDELKLRSKKYLRGKGANLKGLKDKKLRSQLVAREKLYGESAKAAAQAEKWIMPSDQGFLEAEGLEKTYRIKQETIAREVDILSSRNQYDITLPELGPYTLDFTPSGRYMAVGGRKGHLAIVDMMNLSLIRELQVRETVRDVAFLHNELFFAAAQKKYSYIYSREGTELHCLKDHGSVLRLQFLKNHFLLASTNKFGMLLYQDVSTGDVVGKYRTGLGRTNVMQVNPYNSVVSLGHSAGTVTMWKPTSSSPLVKMLCHHGPVSALAFHPNGHIMATAGKDKKIKLWDLRKYEAFQTLPGHANTLEFSQKGLLACGNGSYIQVLRDVSGAQNYSSYMTHSMVKGYQIGKLAFRPYEDVLGIGHSMGWSSILIPGAGEPNFDSWVANPFETPKQRKEKEVQSLRDKLPVETIMLDPSKIGTVKFTKKEKPTVEKMDADMEAAVEAVKGKKLKKKTKGRSKAGKIMPKKQDAIATAKRPYLEQKIQEEKKASSKKQKTNGGVELPKSLQRFAHKKPSS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02379 536 Gene3D - 99 238 IPR015943 GO:0005515
Vifa3g02379 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Vifa3g02379 536 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Vifa3g02379 536 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Vifa3g02379 536 MobiDBLite consensus disorder prediction 471 536 - -
Vifa3g02379 536 SMART WD40_4 147 184 IPR001680 GO:0005515
Vifa3g02379 536 SMART WD40_4 227 266 IPR001680 GO:0005515
Vifa3g02379 536 SMART WD40_4 269 308 IPR001680 GO:0005515
Vifa3g02379 536 SMART WD40_4 105 144 IPR001680 GO:0005515
Vifa3g02379 536 SMART WD40_4 186 223 IPR001680 GO:0005515
Vifa3g02379 536 SMART BING4CT_2 355 435 IPR012952 -
Vifa3g02379 536 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Vifa3g02379 536 Gene3D - 239 391 IPR015943 GO:0005515
Vifa3g02379 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Vifa3g02379 536 SUPERFAMILY WD40 repeat-like 111 384 IPR036322 GO:0005515
Vifa3g02379 536 MobiDBLite consensus disorder prediction 499 514 - -
Vifa3g02379 536 FunFam U3 small nucleolar RNA-associated protein 7 108 390 - -
Vifa3g02379 536 PANTHER WD-REPEAT PROTEIN BING4 12 530 IPR040315 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02379 118 348 U-box Gene Family AT1G04510 25.714 7.26e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02379 K14768 - gmx:100802940 833.172