Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02371 ATGTCAAACGTTTCTAGAGAACCACCTAGGTCAGCTAACCAGGAGGTACTTGAGGTTCGGGATGAGGAGACAGAGAGCGCGACGACTGTATGTCAGCGTGTGGCAGAGATGGATAGAGGAGGCATAAAGGTCAGACTCTTTGAGGATGGTTCTCCCCAGTTGGCCTTCGTGGATATAATGATTGCCAAGTTACAGAATATGTGCAGTGCAGAACAAAACAGCTTCCTTGAGAGTCTTGGTTTTAAAGCTGATACAAAAGTTATTGATTTCACTTCTCATAGTAAGGTACGACACTCAAAAGCAGAAAGTCCCTTTGATGAAACACAGAAGACGTCGAATTCGGTCGAATCAATGATGTTAGAGAAGATGGAACAGAGATGTTATGGAACAAAGTGTTACCGAGGAGTGAGGAGAAGGCCACGGAGAAAATTTGCCGCAGAGATTCGTGACCCAACAAGCAAAGGAAGCAGGGTTTGA 477 0.4507 MSNVSREPPRSANQEVLEVRDEETESATTVCQRVAEMDRGGIKVRLFEDGSPQLAFVDIMIAKLQNMCSAEQNSFLESLGFKADTKVIDFTSHSKVRHSKAESPFDETQKTSNSVESMMLEKMEQRCYGTKCYRGVRRRPRRKFAAEIRDPTSKGSRV 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02371 158 ProSiteProfiles AP2/ERF domain profile. 132 158 IPR001471 GO:0003700|GO:0006355
Vifa3g02371 158 MobiDBLite consensus disorder prediction 1 25 - -
Vifa3g02371 158 PANTHER DNA-BINDING DOMAIN 85 158 IPR044808 GO:0003700|GO:0009873
Vifa3g02371 158 Gene3D AP2/ERF domain 132 158 IPR036955 GO:0003700|GO:0006355
Vifa3g02371 158 MobiDBLite consensus disorder prediction 93 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02371 Vifa-Chr3 605219594 605221026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02371 42 158 AP2-EREBP Transcription Factor Family AT5G61590 36.066 5.03e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02371 - K09286 gmx:100499732 78.9517