Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02368 ATGGCGGGGAATTTCAGATTCATGATGGATCAGAACAATATCGTGAGGTTCTTGACTACAAGTATTGATAGTTTTATTCAAGATAGGTTGATCAACAAAGAGCAGAGAACTCAGCATAAAGATCAGTGTGCTGAGAGATTAGCAGCTGAAGATGGAAATGGTGAGAAAGAAAGTGAGGTTGAGTATTCTGATCAAGCGGTATTGGCGAACCTCGATTGGGGAATTGAAGCTCTTGAAGAAGCTATTAATACTTATAATATGGAGACTAAGCTTGCTAGATTGGATTATGCTGAAAAAATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAGAAGACTGCTGGAGTGCCGAATTCGTATTTATCAGCTTGGGCGCATTTGAATTTATCGTATTTGTGGAAGTTGAGGAACAATATTAAGAGTTGTATTTTTCATTCTCTTGAGATGTTCGTTGTTGATCCATTTTTCTCTAGGATTGATTTCGCGCCTGAGTTATGGAAAAGCCTGTTTCTTCCGCATATGAGTTCGATTGTAGGCTGGTATTCGGAGGAGAGACACAGGCTTATGATGGAGGTGATGCCTGAAACTACTGATTTTTCTTATACAGGTGATTTTGATCGAGTTTTCAATGAGTCTTTGGTGTTTTCTATGAGGCCGAATCAACTTGAGAAATTGCAGAAACTTGAGCAGCTTTATGGAGAGTCTTTAGATGAGAACACGAGGTTGTATGCAAAATATTATAATGACTGTATGAACCCTGATTCTACCTCAAGCAAGAAGGTTGTTCCTATGTTGCCAATTGCTGAGCCGCCAATGACTCCTTTGCATGAGTTGAGTCGGTCGGTTCCTGATTTTGTTAAATTTGGTCCTATTTTGCCCAAGAGTTCTGGATTTTCTATGACAACCAGAAGATCTTATGATGGTTTAAGTGAAACAACCAGAGAGAATTTAACTTCCAATTCCAACCATTCAAAAGGTGAGAAATCATCCATGTGGGGTGCTAAGGAGAGCATAATTGAAGAGATTGAAGATGATTCAGATTCTGAGCATTATGATGCATCTGTAGATTCTGATAAAATCAATATTTTCTCACCTGAACCGAAGACAAGTATCAAGGACGACGATGTTGAACGAAAATTTTTGCGGTTACTGTCTAATCGTTTTAGGGGATCAACTATTTCTGATCACTCTCTATCATCATCTCCAGACATAAGCTCGGATCATATTTTCAACCGCGATGAAGAAGAATTGGTCTTGAAAAATATTAAGAGAAGGAATGATAGTCAAACACCAAGTATTAATCAAGACAATGAGAACAGTCTGGTGTTGAATGACAGTTCCCTTGGTGAAAGTGATGATGGATATCAAAGTTCTGCGTCATTTCCGAAATTAGAGAAACTGACTATTGGATCAAAGCCACCCAAAGATTTTGTTTGTCCAATCACAGGTCAGATATTTAGTGATCCTGTCACACTTGAAACAGGCCAGACCTATGAAAGAAAAGCGATTCAAGAGTGGCTTGGAACAGGAAACACGACATGCCCCATCACGCGGCAGCCTCTATCTGCAAACATCTTACCGAAAACAAACTATGTTTTGAAGAGATTGATTGTATCATGGAAAGAGCAGAATCCTGAACTAGCTCAAGAATTTTCAACGTCTAACACACCAAGAGGTTCTTCATGTTCTCCCTCAGCAAAAGACATTGCAATGATCTCCACTACACAAAGAACGACTGATTCACCAAGTCAGAAGAACAAAGAAGATTATATTAGACAAAGAAACAACAGATTTATGCAGGTTGCCGTCAGTGCATCTCCGACCAGTGTGTTATCTCAAGCTGCAGTTGAAACAATTATAAATTCCTTGACTCCTTATATCACAAGTCTATGTACATCAGAAAACTTGCAGGAATGTGAAGAAGCTATAACGGAAATAGCAAGGTTGTGGAAGGATTCAAAGACTGATCCTCAGATTCATTCTTATTTATCAAAGCCAACTGTCGTAAGCGGTTTAGTAGAAATTCTCTCAGCTTCTCTGAATAGAGAAGTTCTGAGAAGATCAATTTATATTCTCTCAGAGCTGATTTTCGCAGATGAAAGTGTTGGAGAAACACTTAATAGTGTAGATTCTGATTTCGATTGCTTAGCTACTCTACTTAAGAATGGTTTGGCTGAGGCTGCACTTCTTATTTACCAACTTAGGCCAGTTTTTGCTCAGCTTTCGGAACATGAACTTATACCATCTCTTATCCAAGTGATCCAGAACAAAAATGAGGATATAGATGATTTTCAGTTAGCTATAGACCCTAGAGCTGCCTCCATAGCAATTCTTGAGCAAATTTTAATGGGCGGGGACGAATATAACAGGTCTGTTAATGCTTCAAGTGTTATCTCAGCAAATGGAATTCCTGCCATAGTAAAGTATTTGGACAGAATGGAAGGAAGAAGGTCTATCATTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAAGTTGCAAGAGCTCAATAGCAAATAGAATTGAATTGTCACCTGTTCTTGAATTATTTCACGCTGGAAATGATAGCGTGAGAGGAATCTGTGTGGAATTTCTTTCAGAACTGGTTCGATTAAATAGAAGGACGTTCAGCAATCAGATATTACAGATAGTCAAGGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATATCTTCAAATGGCTCCAATGGAACATCAAATTGCTGTTGCTAGTCTTCTTCTTCAGCTTGATCTTTTGGTTGAGCCGCGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAAGCACTTTGGCAAAAGGACTTCTCAAATAATCAAATGAAGGCTTTAGATGCTTTACTATTTCTTATTGGACATGTCACTTCCTCAGGAAAGTCATATACTGAAGCTTGGTTGTTGAAGATTGCCGGATTTGATCAACCTTACAATGTTTTAATGAAGGCCGATCAATTAGGACACAGTGACAAAGATTTGATGGAAACAATGGAGAATGAAAAAAACGCCATGAAATCTTGGCAGAAAAGAGTAGCTTCTGTACTTTGCAATCACGAAAACGGTTCAATATTTCAAGCCTTGGAAGAATGCCTAAAGAGTAACTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGCCACATGGCTCACACACATGCTCTTTACTCTACCTGATACTGGTGTAAGAGATATTGCTCGAAAATCCCTGCTCGAGGCCCTTATAAATGTCATCCAGTCATCCAAGAACCTAGAGGAAAAGATCCTGGCTACCCTAGCTTTGAAGTCTTTCATTAGTGATCCAACTGCTCATGAAGCACTTAGAGTCTATGCTAAAAGCATCTATAGAATCTTGAGGAAGCTGAAGAAGTATTCAACAGTGGCAGCTGATATTTTGAAAGCCTTACTAAATTTAAATTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTAGTCGAGTTAGATTTGAGCTCAAATGGAGAGGTGCTTTCTTTGCTTTACCTCAATGGCCAAGTCTTAAGTGGACATGCTGATGGAACTATCAAGGTATGGGATGCAAGGAAGAGAATACCGCGAGTAACTCAAGAAACTCGTGAGCACAAAAAAGCGGTTACATCTCTTTGTTCTTCAGTTGATAGGCTATACAGTTCTTCCTTGGACAAAACAATCAGGGTTTGGACAATTAAACCCGACGGGATTAAATGTATAGATGTTTATGACGTTAAGGAAGCAGTGTATGAGCTAGCAGCTAATGCTAAATTGGCATGCTATGTAACTCAAGGAACAGGAGTTAAGGTTTTTAACTGGTCAGATCCTCCAAAGCTCATCAACTTCAACAAATATGTGAAATGCCTTGCTGTTGCTGGGGACAAATTGTATTGTGGTTGCTCTGGTTACAGCATACAGGAGGTTAACTTGTCCAAATATACATCAACTTCATTCTTCACTGGTACAAGAAAAAATTGTTGGGAAAACAAACTATACACTCCCTTCAAATTCATGATGATTTCCTCTTTGCTTGTGGTTCTTCTGTTGATACAACCGCGGGAAAGATATTTTCACTTACCTCCAAAATGGTGGTGGGATCACTATCAACTGGACTCGACATCCATCGTGTAG 4149 0.3905 MAGNFRFMMDQNNIVRFLTTSIDSFIQDRLINKEQRTQHKDQCAERLAAEDGNGEKESEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIKSCIFHSLEMFVVDPFFSRIDFAPELWKSLFLPHMSSIVGWYSEERHRLMMEVMPETTDFSYTGDFDRVFNESLVFSMRPNQLEKLQKLEQLYGESLDENTRLYAKYYNDCMNPDSTSSKKVVPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSSGFSMTTRRSYDGLSETTRENLTSNSNHSKGEKSSMWGAKESIIEEIEDDSDSEHYDASVDSDKINIFSPEPKTSIKDDDVERKFLRLLSNRFRGSTISDHSLSSSPDISSDHIFNRDEEELVLKNIKRRNDSQTPSINQDNENSLVLNDSSLGESDDGYQSSASFPKLEKLTIGSKPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQPLSANILPKTNYVLKRLIVSWKEQNPELAQEFSTSNTPRGSSCSPSAKDIAMISTTQRTTDSPSQKNKEDYIRQRNNRFMQVAVSASPTSVLSQAAVETIINSLTPYITSLCTSENLQECEEAITEIARLWKDSKTDPQIHSYLSKPTVVSGLVEILSASLNREVLRRSIYILSELIFADESVGETLNSVDSDFDCLATLLKNGLAEAALLIYQLRPVFAQLSEHELIPSLIQVIQNKNEDIDDFQLAIDPRAASIAILEQILMGGDEYNRSVNASSVISANGIPAIVKYLDRMEGRRSIISILLCCMQAEKSCKSSIANRIELSPVLELFHAGNDSVRGICVEFLSELVRLNRRTFSNQILQIVKDEGAFSTMHTFLVYLQMAPMEHQIAVASLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNNQMKALDALLFLIGHVTSSGKSYTEAWLLKIAGFDQPYNVLMKADQLGHSDKDLMETMENEKNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFTLPDTGVRDIARKSLLEALINVIQSSKNLEEKILATLALKSFISDPTAHEALRVYAKSIYRILRKLKKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHADGTIKVWDARKRIPRVTQETREHKKAVTSLCSSVDRLYSSSLDKTIRVWTIKPDGIKCIDVYDVKEAVYELAANAKLACYVTQGTGVKVFNWSDPPKLINFNKYVKCLAVAGDKLYCGCSGYSIQEVNLSKYTSTSFFTGTRKNCWENKLYTPFKFMMISSLLVVLLLIQPRERYFHLPPKWWWDHYQLDSTSIV 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02368 1382 ProSiteProfiles Trp-Asp (WD) repeats profile. 1207 1239 IPR001680 GO:0005515
Vifa3g02368 1382 MobiDBLite consensus disorder prediction 423 459 - -
Vifa3g02368 1382 Pfam WD domain, G-beta repeat 1207 1236 IPR001680 GO:0005515
Vifa3g02368 1382 Pfam WD domain, G-beta repeat 1179 1195 IPR001680 GO:0005515
Vifa3g02368 1382 Gene3D - 621 902 IPR011989 -
Vifa3g02368 1382 ProSiteProfiles Trp-Asp (WD) repeats profile. 1182 1195 IPR001680 GO:0005515
Vifa3g02368 1382 SUPERFAMILY ARM repeat 619 974 IPR016024 -
Vifa3g02368 1382 CDD RING-Ubox_PUB 474 526 IPR045210 -
Vifa3g02368 1382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 555 IPR013083 -
Vifa3g02368 1382 SMART WD40_4 1200 1237 IPR001680 GO:0005515
Vifa3g02368 1382 SMART WD40_4 1157 1195 IPR001680 GO:0005515
Vifa3g02368 1382 SUPERFAMILY Lipovitellin-phosvitin complex, superhelical domain 931 1147 IPR011030 -
Vifa3g02368 1382 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1335 - -
Vifa3g02368 1382 SUPERFAMILY RING/U-box 472 545 - -
Vifa3g02368 1382 ProSiteProfiles U-box domain profile. 472 547 IPR003613 GO:0004842|GO:0016567
Vifa3g02368 1382 SMART Ubox_2 476 540 IPR003613 GO:0004842|GO:0016567
Vifa3g02368 1382 Gene3D - 1148 1339 IPR015943 GO:0005515
Vifa3g02368 1382 MobiDBLite consensus disorder prediction 302 333 - -
Vifa3g02368 1382 MobiDBLite consensus disorder prediction 424 459 - -
Vifa3g02368 1382 MobiDBLite consensus disorder prediction 302 328 - -
Vifa3g02368 1382 Pfam U-box domain 474 544 IPR003613 GO:0004842|GO:0016567
Vifa3g02368 1382 SUPERFAMILY WD40 repeat-like 1155 1329 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02368 Vifa-Chr3 604729187 604735164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02368 463 870 U-box Gene Family AT1G23030 24.306 2.70e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02368 - - gmx:100776142 2138.61