Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02361 ATGAATATTCATGATCCAGAGTTTAGAAAAATGGGTTATTTCATTTTATTTCTTGTATGCTTAATAATTGTAACCCTTATAGTTACAATTGCCTCTTATCTATGCACTCTACCAACTTTATCACCTCTACCTCCAAACTCTATTGCACGTGAAACAAACAACCACACCACAATAACTGTAGTAGTGGAACCAGCTGATCAAAATACTGCAAATGTGTGTAGAAGTTATGATCAAATTAGTACTCTTCCACGTTTATCTGAAGTTAAGATGTGCAACAGCAACAATATTAATTCAGTAGGTAGTTGTTGCTGTTCCATATGTTTGATGGATTATAGAGAAGCTGATTTGTTGAGAATGCTTCCTGGTTGTGGACATTTCTTTCATGTGGCTTGTGTTGATCCTTGGTTGAGAATGAATTTGACTTGTCCTGTTTGTAGGAAGACATACCGGTCCGTATAA 459 0.3573 MNIHDPEFRKMGYFILFLVCLIIVTLIVTIASYLCTLPTLSPLPPNSIARETNNHTTITVVVEPADQNTANVCRSYDQISTLPRLSEVKMCNSNNINSVGSCCCSICLMDYREADLLRMLPGCGHFFHVACVDPWLRMNLTCPVCRKTYRSV 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02361 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 151 IPR013083 -
Vifa3g02361 152 Pfam Ring finger domain 104 146 IPR001841 -
Vifa3g02361 152 SUPERFAMILY RING/U-box 103 150 - -
Vifa3g02361 152 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 148 IPR045899 -
Vifa3g02361 152 SMART ring_2 104 145 IPR001841 -
Vifa3g02361 152 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Vifa3g02361 152 CDD RING-H2_PA-TM-RING 103 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02361 Vifa-Chr3 604492079 604492537 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02361 11 148 C3H Transcription Factor Family AT5G06490 32.278 1.13e-21 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02361 - - cam:101490155 194.126