Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02359 ATGAACAACAACAGCAACGATGGTTCTGACGCAAATGGGCTCACATATATCCTAACATTTGTATTTGGTCTCGCATTCTTGATTCTTACAATAGTTGTTGCTTGTGTTCGGCTTCATATGTCACAAAATCTAAACGTGCTCAATGTTTTGTCTGGTTTTCCACTGCATCATCAAGAAGACTCAACCATGGAACAAGGAGTTGGTCGTCATAGGGACACAAATTTTGAAGGACAACCGAAGCTATTATACTCTCAAATTCAGAAGAATATAGGGGGCTCTTCAACTTCAAGTTGCTCTATTTGTTTAGGGGATTACAAAGAAAGTGACATGTTGAGGTTGCTTTCTAATTGTGGTCATCTTTATCATGATGCTTGTGTTGATCCATGGCTTAGGTTACATTCCAATTGTCCCATTTGTAGAAAATCATTGCTAGTTTCAACCTAG 444 0.3851 MNNNSNDGSDANGLTYILTFVFGLAFLILTIVVACVRLHMSQNLNVLNVLSGFPLHHQEDSTMEQGVGRHRDTNFEGQPKLLYSQIQKNIGGSSTSSCSICLGDYKESDMLRLLSNCGHLYHDACVDPWLRLHSNCPICRKSLLVST 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02359 147 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Vifa3g02359 147 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 144 IPR045899 -
Vifa3g02359 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 145 IPR013083 -
Vifa3g02359 147 SMART ring_2 98 139 IPR001841 -
Vifa3g02359 147 SUPERFAMILY RING/U-box 97 145 - -
Vifa3g02359 147 Pfam Ring finger domain 97 140 IPR001841 -
Vifa3g02359 147 CDD RING-H2_PA-TM-RING 97 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02359 Vifa-Chr3 604192053 604192496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02359 13 146 C3H Transcription Factor Family AT5G06490 37.342 2.98e-26 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02359 - - gmx:102663718 165.236